Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq1675 827 0.0 >seq1675 Length=5468 Score = 827 bits (916), Expect = 0.0 Identities = 1213/1706 (71%), Gaps = 70/1706 (4%) Strand=Plus/Plus Query 2700 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 2759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 61 Query 2760 GTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATT 2819 ||||||||||| || || || ||| | ||||||||||| || |||| |||||||||||| Sbjct 62 GTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATT 121 Query 2820 AATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAG 2879 |||||||||||||| |||||||| |||||||| | ||||||| ||| ||||| | Sbjct 122 AATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGC 181 Query 2880 GCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAATGCTCGTCAGAAATTACGCGCA 2939 |||||| || || | | | ||| || ||||| || | ||||| |||||||| ||| Sbjct 182 GCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCA 241 Query 2940 AATGGGTTGA---AATG---ATATGAAAAAAGCACGT-----CGTTCTCC-TAGTCGTC- 2986 | || ||| |||| | | | ||||| |||| || || || | |||||| Sbjct 242 GAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTCTGGCGCTCGCCCTGGTCGTCC 299 Query 2987 -----------------------------GTAAAGGTGCTCGCCTCTGGTATGTAGGCGG 3017 ||||||| ||||| || ||||||||||| || Sbjct 300 GCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGG 359 Query 3018 TTCTCAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTAAGGATTATTAATGTCTAATGT 3073 | || |||||||| ||| |||||| ||| ||| ||||| | | ||||||||| | Sbjct 360 TCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATAT 419 Query 3074 ACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCATCTTG-CTT--TTGACTGTGG 3130 |||||| || || ||| |||||| || ||||||| ||| ||| ||| | Sbjct 420 TCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG-CTG-GT 477 Query 3131 CATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGA 3190 || ||||||||| | | || ||||| ||||| |||||||||||||| ||||| || Sbjct 478 CA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGA 536 Query 3191 GCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCCATTGATTC 3250 | | || || ||||| ||| | ||||||||||| |||||||||| | || ||||| || Sbjct 537 GATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTC 596 Query 3251 TAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCATGTTTATGGTGATCAGTGGAT 3310 || || ||| |||| ||||| ||| | || |||||||| ||||||||||| |||||||| Sbjct 597 TACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGAT 656 Query 3311 TCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACTACTAAGTA 3370 | | || ||| ||||||||| |||| | || || || | |||| |||||| || Sbjct 657 TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTA 716 Query 3371 TCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTT 3430 | || |||| | || | |||| || ||| ||| | | ||| || |||||| Sbjct 717 TATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCA 776 Query 3431 TTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGA 3490 |||| |||| |||| ||||||| ||||| |||||||| ||||||||||||||||| Sbjct 777 TTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGA 836 Query 3491 GCGTACTGAAGCTAATCCT-TCAAACTTAGATCGTGATGATTCTCGTTATGGATTCCGTT 3549 ||||| || ||||| ||| | |||| ||| |||||| |||||||||| ||||||| Sbjct 837 CCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTT 895 Query 3550 GTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGC 3609 | |||||||| |||| |||||| ||||||| |||||||| || ||| |||| || | Sbjct 896 GCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCC 955 Query 3610 AAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGC 3669 ||||| | | | || || ||||| ||||||||| |||| || |||||||| | Sbjct 956 AAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATT 1015 Query 3670 TTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCT 3729 | || ||||| || || ||| ||| || ||||||||||||| ||||||||| || | Sbjct 1016 TGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCAT 1075 Query 3730 TTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATT 3789 |||| ||| |||||| ||||| || || ||||| || || ||||| |||| | || Sbjct 1076 TTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATC 1135 Query 3790 TTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGG 3849 | ||||| || || || || ||||| || || |||||| | || | || |||||||| | Sbjct 1136 TCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTG 1195 Query 3850 GGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTG 3909 | || ||||||||||| | |||||| || |||||||| ||||| || ||||||||||| Sbjct 1196 GTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCA 1255 Query 3910 TCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATC 3969 ||| | ||| | ||| ||||| || ||||||| || ||| ||| || | Sbjct 1256 CTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACC 1315 Query 3970 TTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTA 4029 || | | | ||||||||||||||| ||||||| ||||| | |||| ||| | Sbjct 1316 TTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCA 1375 Query 4030 ATTTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTA 4089 | |||||||||||||| |||||| |||| |||||||| |||| || | | Sbjct 1376 ACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGA 1435 Query 4090 AGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAG 4148 || ||||| |||| ||| | ||||||||| | || |||||| || | Sbjct 1436 AGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCT 1494 Query 4149 TATCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGAT 4208 ||||| | ||||| || ||||| ||| || | || ||| || ||||||| Sbjct 1495 TATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGAT 1545 Query 4209 GACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAG 4268 | |||| || | || ||| ||| |||| ||| | ||||||||||| Sbjct 1546 TTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTT 1602 Query 4269 CAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCCATATTCCT 4328 |||||| | |||||||||| ||||| | | |||||| | ||||||||| || | || Sbjct 1603 CAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCG 1662 Query 4329 ACTGTTCGTGATTCTATTATGACCTC 4354 || ||| ||||| || ||||| || Sbjct 1663 ACCACTCGCGATTCAATCATGACTTC 1688 Score = 255 bits (282), Expect = 2e-64 Identities = 189/221 (86%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 5247 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 5306 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 5307 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 5366 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 5367 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 5426 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATG 2779 |||||||||||||||||||||||||||||||| || || || Sbjct 5427 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTG 5467 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 3971 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 4030 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 4031 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 4090 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 4091 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4150 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 4151 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4208 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 4209 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4267 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 4268 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 4325 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 4326 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4365 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Plus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 2482 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 2539 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 2540 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 2596 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 2597 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 2643 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 2644 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 2699 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 2700 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 2759 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 2760 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 2816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19368582587548