Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq1675 823 0.0 >seq1675 Length=5468 Score = 823 bits (912), Expect = 0.0 Identities = 1215/1709 (71%), Gaps = 74/1709 (4%) Strand=Plus/Plus Query 2723 CCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCC 2782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCC 60 Query 2783 CGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCGCTGAGTTTACGGAAAACATTGT 2842 |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | Sbjct 61 CGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTAT 120 Query 2843 TAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCTTCGCGTACACCTTGCGTGTTAA 2902 ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| Sbjct 121 TAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACG 180 Query 2903 GGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAGAATGCTCGTCAGAAACTTCGTG 2961 || ||| || || || |||| ||| ||||| || | ||||| ||| | |||| Sbjct 181 CGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAAAACGTGCGTCAAAAATTACGTG 239 Query 2962 CAAGTGGAGTAATGTAATATG--------AAGAAAGCTC-GTCGTTC-CCCTTCTCGT-- 3009 || ||||| ||||||| | || || | || | || || |||| |||| Sbjct 240 CAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCC 299 Query 3010 -------------------------AAG---AAAGGCGCTCGTCTCTGGTATGTAGGCGG 3041 ||| |||||||||||||| ||||||||||| || Sbjct 300 GCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGG 359 Query 3042 TTCTCAATTTTAATTAACGGGGCTTCGGCCCCTA---TAAGGATTCTTAAATGTCAAACG 3098 | ||||||||||| ||||||||||||||| | ||||| | | |||| || Sbjct 360 TCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTA-TGTCTAATA 418 Query 3099 TGCAAACTTCCGCTGAACGTATTCCTCACGACCTTTCTCATCTGGTTTTTGATGCAGGCA 3158 | |||||| ||| || ||||| || || |||||||| ||||| | || ||| || Sbjct 419 TTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTC 478 Query 3159 AAATTGGTCGTTTAAAGGTTGTTTCTTGGACTCCTGTTGTTGCAGGTGATTCTTTTGAGC 3218 | ||||||||| | | |||| ||||| ||| | || || || || || ||| Sbjct 479 AGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGA 538 Query 3219 TTGATATGATTGGCGCTATTCGCCTTTCCCCGCTTCGTCGTGGCCTTGCTGTTGACTCTC 3278 | || |||||||| | || ||||| || | ||||||||||||||| |||||||| Sbjct 539 TGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA 598 Query 3279 GTGTTGACCTGTTCACGTTTTATGTCCCTCATCGTCATGTATATGGTGAGCAGTGGATTG 3338 ||| ||| | || || |||||||||||||||||||| || |||||||| ||||||||| Sbjct 599 CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTA 658 Query 3339 ATTTTATGAAGCAAGGTGTTGATGCTGCTCCTTTGGCCCCTGTTCAGTGCTCTCGCGGTT 3398 | || |||||| | |||||| |||| ||||| | | ||||| | | || |||| Sbjct 659 AGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAA---CACTACTGGTT 715 Query 3399 GGGATAGTGCTCAG------TATCTTGCTACTATTCCGTCTAGTAACTTAAAGGTTCCTA 3452 ||| || || | ||||| || ||| || || | || | |||| Sbjct 716 ---ATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTA 772 Query 3453 AG--TTTCTTCATCAAGGTTACCTGAACATTTACAATAATTACTTTAAAGCTCCGTGGAT 3510 || ||| || ||| ||||| |||| || || || || || |||||||| |||||||| Sbjct 773 AGCATTTGTT--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGAT 830 Query 3511 GGATGACCTGACTTATGCCAACCCGTCTAATATGGAGGGTGAAGATGTTCGTTTTGGTGT 3570 | ||||| || | || ||||| | | | | || |||| ||||| |||| | Sbjct 831 GCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTT 890 Query 3571 TCGTGCATGTAACTTGAAAACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAACCTC 3630 ||| || | | |||| ||||||||||||||||||||||| || ||||| || Sbjct 891 CCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTC 950 Query 3631 TCATTCTATGGAGACTGAAACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTTATGC 3690 || ||| |||| |||| || ||||||||||||||| |||| || |||||||| Sbjct 951 TCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGC 1010 Query 3691 TCAATTACATACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTGTTAA 3750 | | || |||||||| || || ||||||||||||||| ||||| | |||| || || Sbjct 1011 TAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTC 1070 Query 3751 CGAATTTGGAGGTAGTACTTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGCATTC 3810 ||||||||||| || |||||||| || || || |||||||| ||||| |||| || Sbjct 1071 TTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTC 1130 Query 3811 TGAGTTCTGGGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTCAGTT 3870 | | ||||||| || |||||||||||||| || || ||||||| || | || ||||| Sbjct 1131 TAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTT 1190 Query 3871 CTCCGGTCGTGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTGAGCA 3930 || |||||||| || ||||| | ||| ||||| || ||||| ||||| |||||||| Sbjct 1191 TTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCA 1250 Query 3931 TGGCACTATGTTCACACTCGCATTGGTCCGCTTCCCGCCGACT--CATGAAATGGAGATG 3988 |||||||||||| || || || | || || || ||||| ||| | ||| ||||| Sbjct 1251 TGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATT 1308 Query 3989 CATTACTTAGTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGCTTTG 4048 || ||| | | ||||| | |||||||||||| ||| | ||| | ||||||| |||| Sbjct 1309 CAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG 1368 Query 4049 -ATGGCTAACTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAAGTGC 4107 ||||| |||||||| || ||||| || |||| | | |||| |||||| | | Sbjct 1369 TATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTC 1427 Query 4108 TAGTGCTAAGTTTAAGATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGATCG--CGT 4164 | ||||||||||| ||||| |||||||||||||| |||| |||| ||| || Sbjct 1428 GTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGTATGT 1484 Query 4165 TGCATTGCCGTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTGATGA 4224 | | | ||| || |||||| || || || ||| | | || |||| ||| Sbjct 1485 TTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGA 1544 Query 4225 TATTAAGCAGCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTATGCA 4284 | | | | ||||| || || || | || || || ||||||||| | || Sbjct 1545 TTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCA 1604 Query 4285 GCTTGCGCACTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTAATATGCCGAC 4344 | | ||| ||||||| ||| ||| |||||| ||| ||||||| ||| ||||||| Sbjct 1605 GTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGAC 1664 Query 4345 CACTCGCGACTCTATTATGACCTCTTGAT 4373 ||||||||| || || ||||| || |||| Sbjct 1665 CACTCGCGATTCAATCATGACTTCGTGAT 1693 Score = 295 bits (326), Expect = 3e-76 Identities = 199/223 (89%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 5245 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 5304 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 5305 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 5364 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5365 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 5424 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTG 2803 |||||||||||||||||||||||||||||||||| |||||||| Sbjct 5425 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTG 5467 Score = 165 bits (182), Expect = 3e-37 Identities = 278/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTTTTCGTATTTGATACGTTGACACTTGCTGATGATCGTTTGCAGGCTTTTAAT 1352 || |||||| |||| ||||| || | || | ||||| || || || |||| ||| || Sbjct 3971 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 4030 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 4031 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 4090 Query 1413 GAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| ||| Sbjct 4091 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4150 Query 1473 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTC 1530 | ||| |||| | || |||||||||| |||| ||||| | ||||||| |||| Sbjct 4151 TATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4208 Query 1531 CTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 4209 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4267 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACAT 1649 | || | | |||||||||||| | || || || || || ||||| || Sbjct 4268 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4327 Query 1650 GATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 || |||| ||| || |||||||||||||||||||| Sbjct 4328 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4365 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Plus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 2676 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 2735 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 2736 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 2792 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 2793 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 2852 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 2853 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 2912 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 2913 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 2972 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 2973 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 3029 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 3030 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 3073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19301386117312