Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010235.1_202016-07-08] 4,669 sequences; 26,353,568 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq1675 836 0.0 >seq1675 Length=5468 Score = 836 bits (926), Expect = 0.0 Identities = 1219/1714 (71%), Gaps = 73/1714 (4%) Strand=Plus/Plus Query 2700 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 2759 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 61 Query 2760 GTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATT 2819 ||||||||||| || || || ||| | ||||||||||| || |||| |||||||||||| Sbjct 62 GTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATT 121 Query 2820 AATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAG 2879 ||||||||||||||||||||||| |||||||| | ||||||| ||| ||||| | Sbjct 122 AATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGC 181 Query 2880 GCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAAATGCTCGTCAGAAATTACGCGCA 2939 |||||| || || | | | ||| || || ||||| | ||||| |||||||| ||| Sbjct 182 GCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCA 241 Query 2940 AATGGACTGA---AATGATATGAAG--AAAGCACGT-----CGTTCTCC-TAGTCGTC-- 2986 | ||| ||| |||| | | ||| ||| |||| || || || | |||||| Sbjct 242 GAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCG 300 Query 2987 ----------------------------GTAAAGGTGCCCGCCTTTGGTATGTAGGCGGT 3018 ||||||| || || |||||||||||||| ||| Sbjct 301 CAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGT 360 Query 3019 TCTCAGTTTTAATTATGAGCCCTTCGGGGCTCT--TTAAGGA-AAATTAAATGTCTAATG 3075 || |||||||| | |||||| | | || |||| |||||| |||||||| Sbjct 361 CAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTA--TGTCTAATA 418 Query 3076 TACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTCTCATCTTGCCTT--TGACTGTGG 3133 | |||||| ||| || ||| ||||||||| ||||||| ||| | ||| | Sbjct 419 TTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG-GT 477 Query 3134 CATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCTGTTATTGCTGGCGATTCCTTTGA 3193 || |||||||||| | | || ||||| ||||| ||||| |||||||| ||||| || Sbjct 478 CA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGA 536 Query 3194 GCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCTATTGACTC 3253 | | || || ||||||||| | ||||||||||| |||||||||| | ||||||||||| Sbjct 537 GATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTC 596 Query 3254 TAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGCCATGTTTATGGTGACCAGTGGAT 3313 || || || |||| ||||| ||| | || ||||| || ||||||||||| |||||||| Sbjct 597 TACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGAT 656 Query 3314 TCAATTTATGCGTGATGGTGTTGATGCCGCACCACTCCCTTCCGTTACTACTACTCAGTA 3373 | | || ||| ||||||||| ||||| | || ||||| | |||| |||||| || Sbjct 657 TAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTA 716 Query 3374 TCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTT 3433 | || | || | || | |||| || ||| ||| | | ||| || |||||| Sbjct 717 TATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCA 776 Query 3434 TTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGA 3493 |||| |||| |||| ||||||| ||||| |||||||| ||||||||||||||||| Sbjct 777 TTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGA 836 Query 3494 GCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCGCTATGGATTCC 3549 ||||| || ||||| ||| ||| ||| | | |||||| |||| ||||| |||| Sbjct 837 CCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCC 892 Query 3550 GTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTG 3609 ||||||||||||| |||| |||||| ||||||| |||||||| || ||| |||| || Sbjct 893 GTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTC 952 Query 3610 AGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGC 3669 |||||| | | | || || ||||| ||||||||| |||| || |||||||| Sbjct 953 GCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTA 1012 Query 3670 AGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGATGTTATCTCCA 3729 | | |||||||| || || ||| ||| |||||||||||||| | ||||||||| || Sbjct 1013 ATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTT 1072 Query 3730 GCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCG 3789 ||||| ||| |||||| ||||| || || ||||| || || ||||| |||| | | Sbjct 1073 CATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTA 1132 Query 3790 ATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTCGGACAGTTTT 3849 || ||||||| || || || || ||||| || || |||||| | || | || ||||||| Sbjct 1133 ATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTT 1192 Query 3850 CGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGTGCCGGAGCATG 3909 | ||||| || |||||||| | |||||| || ||||| || ||||| || || ||||||| Sbjct 1193 CTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATG 1252 Query 3910 GTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATT 3969 | ||| | ||| | ||| ||||| || ||||||| || ||| ||| | Sbjct 1253 GCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGT 1312 Query 3970 ATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCCGGCTTTGATTG 4029 | ||| | | | ||||||||||||||| |||| || ||||| | |||| || Sbjct 1313 ACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATG 1372 Query 4030 GTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGGTCGTCCGGGCA 4089 | || |||||||| ||||| |||||| ||||| |||||||| |||| | || | Sbjct 1373 GCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTA 1432 Query 4090 TTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC- 4148 ||| ||||| |||| ||| | ||||||||| | || |||||| || | Sbjct 1433 AGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCT 1491 Query 4149 AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGT 4208 ||||| | |||||||| || || ||| || | || ||| || |||| Sbjct 1492 GCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGT 1542 Query 4209 GATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCT 4268 ||| | |||| || | || ||| ||| |||| ||| | ||||||||||| Sbjct 1543 GATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCC 1599 Query 4269 CAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTTATCGTCATATT 4328 |||||| | |||||||||| ||||| | | |||||| | |||||||| || | Sbjct 1600 GTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTG 1659 Query 4329 CCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 || || ||| ||||| || ||||| || |||| Sbjct 1660 CCGACCACTCGCGATTCAATCATGACTTCGTGAT 1693 Score = 244 bits (270), Expect = 4e-61 Identities = 188/223 (84%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 5245 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 5304 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 5305 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 5364 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 5365 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 5424 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATG 2779 |||||||||||||||||||||||||||||||||| || || || Sbjct 5425 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTG 5467 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 3971 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 4030 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 4031 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 4090 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 4091 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4150 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 4151 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4208 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 4209 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4267 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 4268 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4327 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 4328 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4365 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Plus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 2677 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 2736 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 2737 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 2791 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 2792 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 2850 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 2851 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 2909 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 2910 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 2969 Query 5762 CGTCCAT 5768 |||| || Sbjct 2970 CGTCTAT 2976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384581747128