Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010535.1_202016-07-08] 5,305 sequences; 27,330,976 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq688 708 0.0 >seq688 Length=5385 Score = 708 bits (784), Expect = 0.0 Identities = 1144/1636 (70%), Gaps = 73/1636 (4%) Strand=Plus/Minus Query 2778 TGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCG 2837 || ||| | ||||||||||| || |||| |||||||||||||||||||||||||||||| Sbjct 5384 TGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCG 5325 Query 2838 GTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACT 2897 ||||| |||||||| | ||||||| ||| ||||| | |||||| || || | Sbjct 5324 GTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTT 5265 Query 2898 GTAATTGATGCCGAGGAAAATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGA 2954 | | ||| || || ||||| | ||||| |||||||| ||| | ||| ||| |||| Sbjct 5264 CTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG- 5206 Query 2955 TATGAAG--AAAGCACGT-----CGTTCTCC-TAGTCGTC-------------------- 2986 | | ||| ||| |||| || || || | |||||| Sbjct 5205 TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT 5146 Query 2987 ----------GTAAAGGTGCCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGA 3036 ||||||| || || |||||||||||||| ||| || |||||||| Sbjct 5145 AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAG 5086 Query 3037 GCCCTTCGGGGCTCT--TTAAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAAC 3093 | |||||| | | || |||| |||||| |||||||| | |||||| ||| || | Sbjct 5085 GGGCTTCGGCCCCTTACTTGAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGC 5028 Query 3094 GTGAAATTGTTGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAA 3151 || ||||||||| ||||||| ||| | ||| | || |||||||||| | | Sbjct 5027 GTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTAT 4970 Query 3152 AACTGTTTCATGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGC 3211 || ||||| ||||| ||||| |||||||| ||||| ||| | || || |||||||| Sbjct 4969 TACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGC 4910 Query 3212 TTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCAC 3271 | | ||||||||||| |||||||||| | ||||||||||||| || || |||| || Sbjct 4909 TCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTAC 4850 Query 3272 TTTCTATATTCCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGG 3331 ||| ||| | || ||||| || ||||||||||| ||||||||| | || ||| ||||| Sbjct 4849 TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGG 4790 Query 3332 TGTTGATGCCGCACCACTCCCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTA 3391 |||| ||||| | || ||||| | |||| |||||| ||| || | || | || Sbjct 4789 TGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTT 4730 Query 3392 TGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCT 3451 | |||| || ||| ||| | | ||| || |||||| |||| |||| |||| | Sbjct 4729 TCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTT 4670 Query 3452 GAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCC 3511 |||||| ||||| |||||||| ||||||||||||||||| ||||| || ||||| || Sbjct 4669 GAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCC 4610 Query 3512 TTCAAAT----TTAGACCGTGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAA 3567 | ||| ||| | | |||||| |||| ||||| ||||||||||||||||| |||| Sbjct 4609 T---AATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAA 4554 Query 3568 CTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAA 3627 |||||| ||||||| |||||||| || ||| |||| || |||||| | | | Sbjct 4553 ACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTA 4494 Query 3628 GCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGG 3687 || || ||||| ||||||||| |||| || |||||||| | | |||||||| || | Sbjct 4493 CCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAG 4434 Query 3688 AGCGTACTTATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCT 3747 | ||| ||| |||||||||||||| | ||||||||| || ||||| ||| ||||| Sbjct 4433 AACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCT 4374 Query 3748 CCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTT 3807 | ||||| || || ||||| || || ||||| |||| | | || ||||||| || || | Sbjct 4373 CTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCT 4314 Query 3808 ACGACGTTGACGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGA 3867 | || ||||| || || |||||| | || | || |||||||| ||||| || ||||||| Sbjct 4313 ATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGA 4254 Query 3868 CGTTTAAACACTCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGA 3927 | | |||||| || ||||| || ||||| || || |||||||| ||| | ||| | Sbjct 4253 CCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTG 4194 Query 3928 TGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATA 3987 ||| ||||| || ||||||| || ||| ||| || ||| | | | Sbjct 4193 CGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTG 4134 Query 3988 ATTTGACTTATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTG 4047 ||||||||||||||| |||| || ||||| | |||| ||| || |||||||| |||| Sbjct 4133 CTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTG 4074 Query 4048 AGATTTCTTATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCG 4107 | |||||| ||||| |||||||| |||| | || | ||| ||||| |||| | Sbjct 4073 AAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTG 4014 Query 4108 AGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAA 4166 || | ||||||||| | || |||||| || | ||||| | |||||| Sbjct 4013 AGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAA 3955 Query 4167 GGTTTTCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCT 4226 || || || ||| || | || ||| || ||||||| | |||| || Sbjct 3954 GGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC- 3907 Query 4227 ATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGG 4286 | || ||| ||| |||| ||| | ||||||||||| |||||| | |||||| Sbjct 3906 GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGG 3847 Query 4287 AATAATCAGGCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCT 4346 |||| ||||| | | |||||| | |||||||| || | || || ||| ||||| Sbjct 3846 AATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCA 3787 Query 4347 ATTATGACCTCTTGAT 4362 || ||||| || |||| Sbjct 3786 ATCATGACTTCGTGAT 3771 Score = 242 bits (268), Expect = 1e-60 Identities = 184/217 (85%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 219 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 160 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 159 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 100 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 99 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 40 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGAC 2773 |||||||||||||||||||||||||||||||||| || Sbjct 39 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 3 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 1493 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1434 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 1433 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1374 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1373 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1314 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1313 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1256 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1255 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1197 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 1196 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1137 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 1136 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1099 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 2787 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 2728 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 2727 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 2673 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 2672 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 2614 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 2613 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 2555 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 2554 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 2495 Query 5762 CGTCCAT 5768 |||| || Sbjct 2494 CGTCTAT 2488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384443043160