Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010705.1_202016-07-08] 5,029 sequences; 28,124,222 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq741 700 0.0 >seq741 Length=5385 Score = 700 bits (776), Expect = 0.0 Identities = 1138/1628 (70%), Gaps = 70/1628 (4%) Strand=Plus/Minus Query 2778 TGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCG 2837 || ||| | ||||||||||| || |||| |||||||||||||||||||||||||| ||| Sbjct 5384 TGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCG 5325 Query 2838 GTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACT 2897 ||||| |||||||| | ||||||| ||| ||||| | |||||| || || | Sbjct 5324 GTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTT 5265 Query 2898 GTAATTGATGCCGAAGAGAATGCTCGTCAGAAATTACGCGCAAATGGGTTGA---AATG- 2953 | | ||| || ||||| || | ||||| |||||||| ||| | || ||| |||| Sbjct 5264 CTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGT 5205 Query 2954 --ATATGAAAAAAGCACGT-----CGTTCTCC-TAGTCGTC------------------- 2986 | | | ||||| |||| || || || | |||||| Sbjct 5204 CTAAAGGTAAAAA--ACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTAC 5147 Query 2987 -----------GTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTAT- 3034 ||||||| ||||| || ||||||||||| ||| || |||||||| Sbjct 5146 TAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCA 5087 Query 3035 GGGCCTTCGGGCCC---CTTAAGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACG 3091 ||| |||||| ||| ||| ||||| | | ||||||||| | |||||| || || || Sbjct 5086 GGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCG 5027 Query 3092 TGAAATTGTTGACCTCTCTCATCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAA 3148 | |||||| || ||||||| ||| ||| ||| | || ||||||||| | | Sbjct 5026 TATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTAT 4970 Query 3149 AACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGC 3208 || ||||| ||||| |||||||||||||| ||||| ||| | || || ||||| || Sbjct 4969 TACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGC 4910 Query 3209 TTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCAC 3268 | | ||||||||||| |||||||||| | || ||||| |||| || ||| |||| || Sbjct 4909 TCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTAC 4850 Query 3269 TTTCTATATTCCGCATCGTCATGTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGG 3328 ||| ||| | || |||||||| ||||||||||| ||||||||| | || ||| ||||| Sbjct 4849 TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGG 4790 Query 3329 TGTTGATGCTTCGCCGCTTCCTTCCGTTACTACTACTAAGTATCCGGATGATGCTGGTTA 3388 |||| |||| | || || || | |||| |||||| ||| || |||| | || Sbjct 4789 TGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTT 4730 Query 3389 TGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCT 3448 | |||| || ||| ||| | | ||| || |||||| |||| |||| |||| | Sbjct 4729 TCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTT 4670 Query 3449 GAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCC 3508 |||||| ||||| |||||||| ||||||||||||||||| ||||| || ||||| || Sbjct 4669 GAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCC 4610 Query 3509 TTCAAA-CTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTTGCCATCTTAAAACTA 3567 | | |||| ||| |||||| |||||||||| |||||||| |||||||| |||| | Sbjct 4609 TAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACA 4551 Query 3568 TTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCA 3627 ||||| ||||||| |||||||| || ||| |||| || |||||| | | | || Sbjct 4550 TTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCA 4491 Query 3628 ATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGC 3687 || ||||| ||||||||| |||| || |||||||| | | || ||||| || || | Sbjct 4490 CATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAAC 4431 Query 3688 GTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCT 3747 || ||| || ||||||||||||| ||||||||| || ||||| ||| |||||| | Sbjct 4430 GTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTT 4371 Query 3748 ATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTTGGGCTTCCGGTTACG 3807 |||| || || ||||| || || ||||| |||| | || | ||||| || || || | Sbjct 4370 ATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATG 4311 Query 3808 ACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCGAGTTCAACAGACGT 3867 | ||||| || || |||||| | || | || |||||||| || || ||||||||||| | Sbjct 4310 ATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCT 4251 Query 3868 TTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGATGC 3927 |||||| || |||||||| ||||| || ||||||||||| ||| | ||| | || Sbjct 4250 ATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGC 4191 Query 3928 TGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATT 3987 | ||||| || ||||||| || ||| ||| || ||| | | | || Sbjct 4190 TTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTT 4131 Query 3988 TGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTTGCCGCCGCGTGAGA 4047 ||||||||||||| ||||||| ||||| | |||| ||| || |||||||||||||| | Sbjct 4130 TGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAA 4071 Query 4048 TTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGATTAAGGTTGCCGAGT 4107 ||||| |||| |||||||| |||| || | ||| ||||| |||| ||| Sbjct 4070 TTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGG 4011 Query 4108 CTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAGGGT 4166 | ||||||||| | || |||||| || | ||||| | ||||| || Sbjct 4010 GTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGC 3952 Query 4167 TTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATT 4226 ||||| ||| || | || ||| || ||||||| | |||| || | Sbjct 3951 TTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTA 3904 Query 4227 CTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAAT 4286 || ||| ||| |||| ||| | ||||||||||| |||||| | ||||||||| Sbjct 3903 CTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAAT 3844 Query 4287 AATCAGGCTCGTTATAATGTTAATGTTTATCGCCATATTCCTACTGTTCGTGATTCTATT 4346 | ||||| | | |||||| | ||||||||| || | || || ||| ||||| || Sbjct 3843 AGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATC 3784 Query 4347 ATGACCTC 4354 ||||| || Sbjct 3783 ATGACTTC 3776 Score = 253 bits (280), Expect = 8e-64 Identities = 185/215 (86%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 217 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 158 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 157 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 98 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 97 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 38 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGAC 2773 |||||||||||||||||||||||||||||||| || Sbjct 37 ATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 3 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 1493 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1434 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 1433 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1374 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1373 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1314 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 1313 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1256 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 1255 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1197 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 1196 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 1139 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 1138 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1099 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 2982 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 2925 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 2924 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 2868 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 2867 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 2821 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 2820 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 2765 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 2764 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 2705 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 2704 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 2648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19368504140668