Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010715.1_202016-07-08] 5,717 sequences; 25,920,840 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq700 581 1e-162 >seq700 Length=5476 Score = 581 bits (644), Expect = 1e-162 Identities = 964/1382 (70%), Gaps = 31/1382 (2%) Strand=Plus/Plus Query 2987 CGTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGG 3046 |||||||| ||||| || ||||||||||| ||| || |||||||| || |||||| Sbjct 91 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 150 Query 3047 GGCCTT--TTAAGGA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATT 3102 |||| || |||| |||| ||||||||| | |||||| ||| || ||| Sbjct 151 CCCCTTACTTGAGGATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCG 207 Query 3103 GTTGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTT 3160 |||||| || ||||||| ||| | ||| | || | |||||||||| | || ||| Sbjct 208 CATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTT 265 Query 3161 CATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTC 3220 || ||||| |||||||||||||| ||||| ||| | || || ||||| ||| | |||| Sbjct 266 CAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTC 325 Query 3221 TTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACA 3280 |||| || |||||||||| | |||||||| |||| || || |||| || || || Sbjct 326 TTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATG 385 Query 3281 TTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATG 3340 | || |||||||| |||||||| || ||||||||| |||| ||| ||||||||||||| Sbjct 386 TCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATG 445 Query 3341 CTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTA 3400 | ||||| || |||||| | | | ||| |||||||| | || | | || | Sbjct 446 CCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCA 505 Query 3401 CTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACA 3457 | ||| |||| | ||||| || |||||| |||| |||| | ||| |||| | Sbjct 506 CGATTAACCCTGATACCAATAA---AATCCCTAAGCATTTGTTTCAGGGTTATTTGAATA 562 Query 3458 TTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTA 3517 | || || |||||||| || |||||||||||||| ||||||||||| ||||| | Sbjct 563 TCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATG 622 Query 3518 ATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGT 3577 | |||||| | ||||||||||||||| | |||||||||||||| || ||||| |||||| Sbjct 623 AGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGA 682 Query 3578 CTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCA 3637 |||||||||| ||||| || || | | || ||||| | | | || || | Sbjct 683 CTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTA 742 Query 3638 TTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTT 3697 |||| ||||||||| ||||||| |||||||| | | || ||||| || || ||| || Sbjct 743 TTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATT 802 Query 3698 ACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATG 3757 |||| ||||||||||||| ||||||||| || ||||| ||| |||||| ||||| | Sbjct 803 ACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACG 862 Query 3758 CCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACGACGTTG 3817 | || ||||| || || ||||| |||| | | | ||||||| || || || || |||| Sbjct 863 CTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTG 922 Query 3818 ACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAAC 3877 | || || |||||| | || | || || || |||||||| || || ||||| | ||||| Sbjct 923 ATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAAC 982 Query 3878 ACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGGCTCTGATTC 3937 | || |||||||| ||||| || ||||||||||| ||| | ||| | || || ||| Sbjct 983 ATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTC 1042 Query 3938 GCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTGCTGGTAAGTCTCAGTTAACCT 3997 | || ||||||| | ||| || || ||| | ||| | || || | Sbjct 1043 GTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTT 1102 Query 3998 ATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACTTGCCTCCTCGCGAGATTAGTT 4057 ||||||| ||||||||||||| | | || ||| |||||||| || || || ||| | Sbjct 1103 ATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATT-TCT 1161 Query 4058 ATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAGATTAAAGTTGCCGAGTCTATT 4116 || | ||| | |||||| |||| ||| || ||| |||| |||| ||| | Sbjct 1162 ATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAG 1221 Query 4117 TGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTATCATGATTTGCATGGATTCCCG 4176 ||||||||| | ||| || ||| | ||||| | | | || ||||| Sbjct 1222 TGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCA 1281 Query 4177 TTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAATCTTCAGGAAGCTATCCTTGTT 4236 ||| || | || ||| || |||||| || | || ||| | ||| || Sbjct 1282 TTCATTCAGGAACCGC---------CTTCTGGTG---ATTTGCAAGAACGCGTACTTATT 1329 Query 4237 CGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCAGTTGCTACAGTGGAACAAACAG 4296 || || || || ||||| || |||||||| |||||| | |||||||| | ||| Sbjct 1330 CGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAG 1389 Query 4297 GCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTACTGTACGTGATTCCATTATGACC 4356 | | | ||| || | ||||||||| || |||| || || ||||| || ||||| Sbjct 1390 GTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACT 1449 Query 4357 TC 4358 || Sbjct 1450 TC 1451 Score = 374 bits (414), Expect = 3e-100 Identities = 321/397 (81%), Gaps = 0/397 (0%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 5010 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 5069 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 5070 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 5129 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5130 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 5189 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 5190 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 5249 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 5250 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 5309 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 5310 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 5369 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGAT 2956 | ||||| |||||||| ||| | ||| ||| || || Sbjct 5370 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 5406 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 3734 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3793 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 3794 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3853 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 3854 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3913 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 3914 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3971 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 3972 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4030 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 4031 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4090 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 4091 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4128 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 2625 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 2684 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 2685 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 2739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19361954631588