Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900010715.1_202016-07-08] 5,717 sequences; 25,920,840 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq700 650 0.0 >seq700 Length=5476 Score = 650 bits (720), Expect = 0.0 Identities = 984/1387 (71%), Gaps = 31/1387 (2%) Strand=Plus/Plus Query 2986 CGTAAAGGTGCCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGG 3045 |||||||| || || |||||||||||||| ||| || |||||||| | |||||| Sbjct 91 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 150 Query 3046 GGCTCT--TTAAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTG 3102 | | || |||| |||||| |||||||| | |||||| ||| || ||| Sbjct 151 CCCCTTACTTGAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC 208 Query 3103 TTGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTC 3160 ||||||||| ||||||| ||| | ||| | || |||||||||| | | || |||| Sbjct 209 ATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTC 266 Query 3161 ATGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCT 3220 | ||||| ||||| |||||||| ||||| ||| | || || ||||||||| | ||||| Sbjct 267 AACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCT 326 Query 3221 TTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATAT 3280 |||||| |||||||||| | ||||||||||||| || || |||| ||||| ||| | Sbjct 327 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGT 386 Query 3281 TCCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGC 3340 || ||||| || ||||||||||| ||||||||| | || ||| ||||||||| |||| Sbjct 387 CCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGC 446 Query 3341 CGCACCACTCCCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTAC 3400 | | || ||||| | |||| |||||| ||| || | || | || | |||| || Sbjct 447 CACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCAC 506 Query 3401 TATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTA 3460 ||| ||| | | ||| || |||||| |||| |||| |||| ||||||| || Sbjct 507 GATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTA 566 Query 3461 TAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT-- 3518 ||| |||||||| ||||||||||||||||| ||||| || ||||| ||| ||| Sbjct 567 TAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---AATGA 623 Query 3519 --TTAGACCGTGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGT 3576 ||| | | |||||| |||| ||||| ||||||||||||||||| |||| |||||| Sbjct 624 GCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGA 682 Query 3577 CTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCA 3636 ||||||| |||||||| || ||| |||| || |||||| | | | || || | Sbjct 683 CTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTA 742 Query 3637 TTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTT 3696 |||| ||||||||| |||| || |||||||| | | |||||||| || || ||| || Sbjct 743 TTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATT 802 Query 3697 ATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATG 3756 | |||||||||||||| | ||||||||| || ||||| ||| |||||| ||||| | Sbjct 803 ACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACG 862 Query 3757 CCGATAACCGACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTG 3816 | || ||||| || || ||||| |||| | | || ||||||| || || || || |||| Sbjct 863 CTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTG 922 Query 3817 ACGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAAC 3876 | || || |||||| | || | || |||||||| ||||| || |||||||| | ||||| Sbjct 923 ATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAAC 982 Query 3877 ACTCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTC 3936 | || ||||| || ||||| || || |||||||| ||| | ||| | ||| |||| Sbjct 983 ATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTC 1042 Query 3937 GCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTT 3996 | || ||||||| || ||| ||| || ||| | | | |||||||| Sbjct 1043 GTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTT 1102 Query 3997 ATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTT 4056 ||||||| |||| || ||||| | |||| ||| || |||||||| ||||| |||||| Sbjct 1103 ATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTA 1162 Query 4057 ATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCT 4116 ||||| |||||||| |||| | || | ||| ||||| |||| ||| | | Sbjct 1163 TGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGT 1222 Query 4117 GGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCG 4175 |||||||| | || |||||| || | ||||| | |||||||| || || Sbjct 1223 GGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCA 1281 Query 4176 TTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATT 4235 ||| || | || ||| || ||||||| | |||| || | || ||| Sbjct 1282 TTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATT 1329 Query 4236 GACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAG 4295 ||| |||| ||| | ||||||||||| |||||| | |||||||||| |||| Sbjct 1330 CGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAG 1389 Query 4296 GCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTATTATGACC 4355 | | | |||||| | |||||||| || | || || ||| ||||| || ||||| Sbjct 1390 GTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACT 1449 Query 4356 TCTTGAT 4362 || |||| Sbjct 1450 TCGTGAT 1456 Score = 370 bits (410), Expect = 4e-99 Identities = 318/393 (81%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 5008 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 5067 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 5068 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 5127 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 5128 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 5187 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 5188 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 5247 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 5248 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 5307 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 5308 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 5367 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA 2949 | | ||||| |||||||| ||| | ||| ||| Sbjct 5368 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGA 5400 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 3734 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3793 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 3794 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 3853 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 3854 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 3913 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 3914 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 3971 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 3972 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4030 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 4031 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4090 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 4091 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4128 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Plus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 2440 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 2499 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 2500 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 2554 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 2555 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 2613 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 2614 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 2672 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 2673 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 2732 Query 5762 CGTCCAT 5768 |||| || Sbjct 2733 CGTCTAT 2739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384353190904