Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq2969 753 0.0 >seq2969 Length=5468 Score = 753 bits (834), Expect = 0.0 Identities = 1198/1714 (70%), Gaps = 71/1714 (4%) Strand=Plus/Minus Query 2695 GGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTT 2754 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5468 GGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTT 5409 Query 2755 CATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAAC 2814 ||||||||||| | ||||| || || ||| | ||||||||||| || |||| |||||| Sbjct 5408 CATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAAC 5349 Query 2815 ATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGT 2874 ||||| |||||||||||||| |||||||| |||||||| | ||||||| ||| ||||| Sbjct 5348 ATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGT 5289 Query 2875 ATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAATGCTCGTCAGAAATTA 2934 | |||||| || || | | | || || || ||||| | ||||| |||||| Sbjct 5288 GTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTA 5229 Query 2935 CGCGCAAATGGACTGAAGTGATATG--AAG--AAAGCACGT-----CGTTCTCC-TAGTC 2984 || ||| | ||| ||| || || | ||| ||| |||| || || || | ||| Sbjct 5228 CGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTC 5169 Query 2985 GTC------------------------------GTAAAGGTGCTCGCCTCTGGTATGTAG 3014 ||| ||||||| ||||| || |||||||||| Sbjct 5168 GTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAG 5109 Query 3015 GCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAGGA--AATTCAAATGT 3070 | ||| || |||||||| || |||||| |||| || |||| |||| |||| Sbjct 5108 GTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATT---ATGT 5052 Query 3071 CTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTCATCTTGCCTT--TGA 3128 ||||| | |||||| ||| || ||| |||||| || ||||||| ||| | Sbjct 5051 CTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG 4992 Query 3129 CTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGTTATCGCTGGCGATTC 3188 ||| | || | |||||||||| | || ||||| ||||| |||||||||||||| || Sbjct 4991 CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTC 4934 Query 3189 CTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCTAT 3248 ||| ||| | || || ||||| ||| | |||||||| || |||||||||| | ||||| Sbjct 4933 CTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTAT 4874 Query 3249 TGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCATGTTTATGGCGACCA 3308 ||| |||| || || |||| || || || | || |||||||| |||||||| || || Sbjct 4873 TGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA 4814 Query 3309 GTGGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAA 3368 ||||||| |||| ||| |||||||||||||| ||||| || |||||| | Sbjct 4813 GTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTAC 4754 Query 3369 TCGCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTAT 3425 | | ||| |||||||| | || | | || || ||| |||| | ||||| || Sbjct 4753 TGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---AT 4697 Query 3426 TCCTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTG 3485 |||||| |||| |||| | ||| |||| || || || |||||||| || ||||| Sbjct 4696 CCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTG 4637 Query 3486 GATGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCG 3545 ||||||||| ||||||||||| ||||| | | |||||| | ||||||||||||||| | Sbjct 4636 GATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGG 4577 Query 3546 CTTCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATT 3605 |||||||||||||| || ||||| |||||| |||||||||| ||||| || || | | Sbjct 4576 TTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCT 4517 Query 3606 GGCTGAAGAAATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTA 3665 || ||||| | | | || || ||||| ||||||||| ||||||| ||||| Sbjct 4516 TTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTA 4457 Query 3666 TGCGCAGCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTAT 3725 ||| | | || ||||| || || ||| |||||| ||||||||||||| ||||||||| Sbjct 4456 TGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 4397 Query 3726 CTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCA 3785 || ||||| ||| |||||| ||||| || || ||||| || || ||||| |||| Sbjct 4396 TTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCG 4337 Query 3786 CACCGACTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACA 3845 | | | ||||||| || || || || ||||| || || |||||| | || | || || Sbjct 4336 CTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCA 4277 Query 3846 ATTCTCTGGTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGA 3905 || |||||||| || || ||||| | |||||| || |||||||| ||||| || ||||| Sbjct 4276 GTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGA 4217 Query 3906 GCATGGTGTCATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCA 3965 |||||| ||| | ||| | || || |||| || ||||||| | ||| Sbjct 4216 GCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGAT 4157 Query 3966 CCATTATCTTGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCT 4025 || || ||| | ||| | || || |||||||| ||||||||||||| | | | Sbjct 4156 TCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTT 4097 Query 4026 GATTGGTAACTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTT 4084 | ||| |||||||| || || || ||| ||| | ||| | |||||| |||| || Sbjct 4096 GTATGGCAACTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATT 4038 Query 4085 CTGGTATTAAGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTA 4144 | || ||| |||| |||| ||| | ||||||||| | ||| || ||| Sbjct 4037 CGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTT 3978 Query 4145 ACTTTAAGTATCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTA 4204 | ||||| | | | || ||||| ||| || | || ||| || Sbjct 3977 CTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTT 3927 Query 4205 CTGGTGATAATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCC 4264 |||||| || | || ||| | ||| |||| || || || ||||| || |||| Sbjct 3926 CTGGTG---ATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCC 3870 Query 4265 AGTCTCAGCAGTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCC 4324 |||| |||||| | |||||||| | |||| | | ||| || | ||||||||| Sbjct 3869 AGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA 3810 Query 4325 ATATGCCTACTGTACGTGATTCCATTATGACCTC 4358 || |||| || || ||||| || ||||| || Sbjct 3809 ATCTGCCGACCACTCGCGATTCAATCATGACTTC 3776 Score = 257 bits (284), Expect = 6e-65 Identities = 186/215 (87%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 217 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 158 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 157 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 98 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 97 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 38 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAAC 2774 |||||||||||||||||||||||||| | ||||| Sbjct 37 ATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 3 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 1493 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1434 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 1433 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1374 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1373 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1314 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1313 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1256 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1255 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1197 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 1196 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1137 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 1136 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1099 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 2602 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 2543 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 2542 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 2488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362141752712