Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq2969 829 0.0 >seq2969 Length=5468 Score = 829 bits (918), Expect = 0.0 Identities = 1217/1712 (71%), Gaps = 70/1712 (4%) Strand=Plus/Minus Query 2694 GGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTT 2753 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5468 GGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTT 5409 Query 2754 CATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAAC 2813 ||||||||||||||||| || || || ||| | ||||||||||| || |||| |||||| Sbjct 5408 CATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAAC 5349 Query 2814 ATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGT 2873 |||||||||||||||||||| |||||||| |||||||| | ||||||| ||| ||||| Sbjct 5348 ATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGT 5289 Query 2874 ATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAATGCTCGTCAGAAATTA 2933 | |||||| || || | | | ||| || ||||| || | ||||| |||||| Sbjct 5288 GTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTA 5229 Query 2934 CGCGCAAATGGGTTGA---AATG---ATATGAAAAAAGCACGT-----CGTTCTCC-TAG 2981 || ||| | || ||| |||| | | | ||||| |||| || || || | | Sbjct 5228 CGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTCTGGCGCTCGCCCTGG 5171 Query 2982 TCGTC------------------------------GTAAAGGTGCTCGCCTCTGGTATGT 3011 ||||| ||||||| ||||| || |||||||| Sbjct 5170 TCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGT 5111 Query 3012 AGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGGGCCC---CTTAAGGATTATTAATGTC 3067 ||| ||| || |||||||| ||| |||||| ||| ||| ||||| | | ||||| Sbjct 5110 AGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTATGTC 5051 Query 3068 TAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCATCTTG-CTT--TTGA 3124 |||| | |||||| || || ||| |||||| || ||||||| ||| ||| Sbjct 5050 TAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG- 4992 Query 3125 CTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGTTATCGCTGGCGATTC 3184 ||| | || ||||||||| | | || ||||| ||||| |||||||||||||| || Sbjct 4991 CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTC 4934 Query 3185 CTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCCAT 3244 ||| ||| | || || ||||| ||| | ||||||||||| |||||||||| | || || Sbjct 4933 CTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTAT 4874 Query 3245 TGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCATGTTTATGGTGATCA 3304 ||| |||| || ||| |||| ||||| ||| | || |||||||| ||||||||||| || Sbjct 4873 TGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA 4814 Query 3305 GTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACTAC 3364 ||||||| | || ||| ||||||||| |||| | || || || | |||| ||||| Sbjct 4813 GTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTAC 4754 Query 3365 TAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCC 3424 | ||| || |||| | || | |||| || ||| ||| | | ||| || || Sbjct 4753 TGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCC 4694 Query 3425 TAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGAT 3484 |||| |||| |||| |||| ||||||| ||||| |||||||| ||||||||||| Sbjct 4693 TAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGAT 4634 Query 3485 GCCTGAGCGTACTGAAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGGAT 3543 |||||| ||||| || ||||| ||| | |||| ||| |||||| |||||||||| | Sbjct 4633 GCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTT 4575 Query 3544 TCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCG 3603 ||||||| |||||||| |||| |||||| ||||||| |||||||| || ||| |||| Sbjct 4574 TCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTT 4515 Query 3604 CTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATG 3663 || |||||| | | | || || ||||| ||||||||| |||| || ||||||| Sbjct 4514 CTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATG 4455 Query 3664 CGCAGCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCT 3723 | | | || ||||| || || ||| ||| || ||||||||||||| ||||||||| | Sbjct 4454 CTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTT 4395 Query 3724 CCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATA 3783 | ||||| ||| |||||| ||||| || || ||||| || || ||||| |||| Sbjct 4394 CTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCT 4335 Query 3784 CCGATTTTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGT 3843 | || | ||||| || || || || ||||| || || |||||| | || | || |||| Sbjct 4334 CTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGT 4275 Query 3844 TTTCGGGGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGC 3903 |||| || || ||||||||||| | |||||| || |||||||| ||||| || ||||||| Sbjct 4274 TTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGC 4215 Query 3904 ATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATC 3963 |||| ||| | ||| | ||| ||||| || ||||||| || ||| || Sbjct 4214 ATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTC 4155 Query 3964 ATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGA 4023 | || ||| | | | ||||||||||||||| ||||||| ||||| | |||| Sbjct 4154 AGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGT 4095 Query 4024 TTGGTAATTTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGG 4083 ||| || |||||||||||||| |||||| |||| |||||||| |||| || Sbjct 4094 ATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGT 4035 Query 4084 GCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACT 4143 | ||| ||||| |||| ||| | ||||||||| | || |||||| || Sbjct 4034 CTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCT 3976 Query 4144 AC-AAGTATCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGT 4202 | ||||| | ||||| || ||||| ||| || | || ||| || | Sbjct 3975 CCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCT 3925 Query 4203 GGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAG 4262 |||||| | |||| || | || ||| ||| |||| ||| | ||||||||| Sbjct 3924 GGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAG 3868 Query 4263 TCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCCAT 4322 || |||||| | |||||||||| ||||| | | |||||| | ||||||||| || Sbjct 3867 TCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAAT 3808 Query 4323 ATTCCTACTGTTCGTGATTCTATTATGACCTC 4354 | || || ||| ||||| || ||||| || Sbjct 3807 CTGCCGACCACTCGCGATTCAATCATGACTTC 3776 Score = 253 bits (280), Expect = 8e-64 Identities = 185/215 (86%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 217 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 158 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 157 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 98 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 97 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 38 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGAC 2773 |||||||||||||||||||||||||||||||| || Sbjct 37 ATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 3 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 1493 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1434 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 1433 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1374 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1373 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1314 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 1313 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1256 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 1255 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1197 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 1196 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 1139 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 1138 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1099 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 2982 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 2925 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 2924 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 2868 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 2867 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 2821 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 2820 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 2765 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 2764 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 2705 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 2704 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 2648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19368541402936