Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900011195.1_202016-07-08] 4,858 sequences; 26,275,703 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq2969 838 0.0 >seq2969 Length=5468 Score = 838 bits (928), Expect = 0.0 Identities = 1223/1720 (71%), Gaps = 73/1720 (4%) Strand=Plus/Minus Query 2694 GGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTT 2753 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5468 GGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTT 5409 Query 2754 CATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAAC 2813 ||||||||||||||||| || || || ||| | ||||||||||| || |||| |||||| Sbjct 5408 CATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAAC 5349 Query 2814 ATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGT 2873 ||||||||||||||||||||||||||||| |||||||| | ||||||| ||| ||||| Sbjct 5348 ATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGT 5289 Query 2874 ATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAAATGCTCGTCAGAAATTA 2933 | |||||| || || | | | ||| || || ||||| | ||||| |||||| Sbjct 5288 GTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTA 5229 Query 2934 CGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT-----CGTTCTCC-TAGT 2982 || ||| | ||| ||| |||| | | ||| ||| |||| || || || | || Sbjct 5228 CGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGT 5170 Query 2983 CGTC------------------------------GTAAAGGTGCCCGCCTTTGGTATGTA 3012 |||| ||||||| || || |||||||||||| Sbjct 5169 CGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTA 5110 Query 3013 GGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGCTCT--TTAAGGA-AAATTAAATGT 3069 || ||| || |||||||| | |||||| | | || |||| |||||| ||| Sbjct 5109 GGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAGGATAAATTA--TGT 5052 Query 3070 CTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTCTCATCTTGCCTT--TGA 3127 ||||| | |||||| ||| || ||| ||||||||| ||||||| ||| | Sbjct 5051 CTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTG 4992 Query 3128 CTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCTGTTATTGCTGGCGATTC 3187 ||| | || |||||||||| | | || ||||| ||||| ||||| |||||||| || Sbjct 4991 CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTC 4934 Query 3188 CTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCTAT 3247 ||| ||| | || || ||||||||| | ||||||||||| |||||||||| | ||||| Sbjct 4933 CTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTAT 4874 Query 3248 TGACTCTAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGCCATGTTTATGGTGACCA 3307 |||||||| || || |||| ||||| ||| | || ||||| || ||||||||||| || Sbjct 4873 TGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACA 4814 Query 3308 GTGGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTCCCTTCCGTTACTACTAC 3367 ||||||| | || ||| ||||||||| ||||| | || ||||| | |||| ||||| Sbjct 4813 GTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTAC 4754 Query 3368 TCAGTATCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCC 3427 | ||| || | || | || | |||| || ||| ||| | | ||| || || Sbjct 4753 TGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCC 4694 Query 3428 TAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGAT 3487 |||| |||| |||| |||| ||||||| ||||| |||||||| ||||||||||| Sbjct 4693 TAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGAT 4634 Query 3488 GCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCGCTATG 3543 |||||| ||||| || ||||| ||| ||| ||| | | |||||| |||| |||| Sbjct 4633 GCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCGTTATG 4578 Query 3544 GATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGC 3603 | ||||||||||||||||| |||| |||||| ||||||| |||||||| || ||| ||| Sbjct 4577 GTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGC 4518 Query 3604 TCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTT 3663 | || |||||| | | | || || ||||| ||||||||| |||| || |||| Sbjct 4517 TTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTT 4458 Query 3664 ATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGATGTTA 3723 |||| | | |||||||| || || ||| ||| |||||||||||||| | |||||||| Sbjct 4457 ATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTA 4398 Query 3724 TCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGC 3783 | || ||||| ||| |||||| ||||| || || ||||| || || ||||| |||| Sbjct 4397 TTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGC 4338 Query 3784 ACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTCGGAC 3843 | | || ||||||| || || || || ||||| || || |||||| | || | || | Sbjct 4337 GCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCC 4278 Query 3844 AGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGTGCCGG 3903 ||||||| ||||| || |||||||| | |||||| || ||||| || ||||| || || | Sbjct 4277 AGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTG 4218 Query 3904 AGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGC 3963 ||||||| ||| | ||| | ||| ||||| || ||||||| || ||| Sbjct 4217 AGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGA 4158 Query 3964 ATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCCGGCTT 4023 ||| || ||| | | | ||||||||||||||| |||| || ||||| | || Sbjct 4157 TTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTT 4098 Query 4024 TGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGGTCGTC 4083 || ||| || |||||||| ||||| |||||| ||||| |||||||| |||| | Sbjct 4097 TGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATT 4038 Query 4084 CGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTA 4143 || | ||| ||||| |||| ||| | ||||||||| | || |||||| Sbjct 4037 CGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT- 3979 Query 4144 ACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTACGACT 4202 || | ||||| | |||||||| || || ||| || | || ||| || Sbjct 3978 TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CT 3928 Query 4203 AGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTC 4262 ||||||| | |||| || | || ||| ||| |||| ||| | |||||| Sbjct 3927 TCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTC 3871 Query 4263 CAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTTATCGT 4322 ||||| |||||| | |||||||||| ||||| | | |||||| | |||||||| Sbjct 3870 CAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGC 3811 Query 4323 CATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 || | || || ||| ||||| || ||||| || |||| Sbjct 3810 AATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 3771 Score = 242 bits (268), Expect = 1e-60 Identities = 184/217 (85%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 219 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 160 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 159 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 100 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 99 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 40 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGAC 2773 |||||||||||||||||||||||||||||||||| || Sbjct 39 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAAC 3 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 1493 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1434 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 1433 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1374 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1373 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1314 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1313 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1256 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1255 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1197 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 1196 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1137 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 1136 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1099 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 2787 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 2728 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 2727 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 2673 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 2672 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 2614 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 2613 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 2555 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 2554 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 2495 Query 5762 CGTCCAT 5768 |||| || Sbjct 2494 CGTCTAT 2488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384540528496