Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900012385.1_202016-07-08] 4,708 sequences; 27,248,364 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq1678 479 1e-131 >seq1678 Length=5452 Score = 479 bits (530), Expect = 1e-131 Identities = 803/1158 (69%), Gaps = 20/1158 (2%) Strand=Plus/Minus Query 3205 GTTGGTGCTTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGAT 3264 ||||| ||| | |||||||| || |||||||||| | |||||||| |||| || || Sbjct 5452 GTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGAC 5393 Query 3265 TTTTTCACCTTCTACATTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATG 3324 |||| || || || | || |||||||| |||||||| || ||||||||| |||| ||| Sbjct 5392 ATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATG 5333 Query 3325 CGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGGACCAT 3384 |||||||||||||| ||||| || |||||| | | | ||| |||||| Sbjct 5332 AAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCAT 5273 Query 3385 GCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTTTGCAT 3441 || | || | | || || ||| |||| | ||||| || |||||| |||| | Sbjct 5272 GCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA---ATCCCTAAGCATTTGTTT 5216 Query 3442 CAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGCGTACC 3501 ||| | ||| |||| || || || |||||||| || |||||||||||||| |||||| Sbjct 5215 CAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACC 5156 Query 3502 GAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCTGCCAC 3561 ||||| ||||| | | |||||| | ||||||||||||||| | |||||||||||||| Sbjct 5155 GAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCAT 5096 Query 3562 CTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAATGGGT 3621 || ||||| |||||| |||||||||| ||||| || || | | || ||||| Sbjct 5095 CTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG 5036 Query 3622 ATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTCACACT 3681 | | | || || ||||| ||||||||| ||||||| |||||||| | | || ||| Sbjct 5035 ACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT 4976 Query 3682 GAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGT 3741 || || || ||| |||||| ||||||||||||| ||||||||| || ||||| ||| Sbjct 4975 GACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGT 4916 Query 3742 TCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCT 3801 |||||| ||||| || || ||||| || || ||||| |||| | | | ||||||| Sbjct 4915 AAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCA 4856 Query 3802 TCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTC 3861 || || || || ||||| || || |||||| | || | || || || |||||||| || Sbjct 4855 TCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTT 4796 Query 3862 CAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATG 3921 || ||||| | |||||| || |||||||| ||||| || ||||||||||| ||| | Sbjct 4795 CAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTT 4736 Query 3922 ACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTGCTGGT 3981 ||| | || || |||| || ||||||| | ||| || || ||| | | Sbjct 4735 ACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCT 4676 Query 3982 AAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACTTGCCT 4041 || | || || |||||||| ||||||||||||| | | || ||| |||||||| Sbjct 4675 AAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCG 4616 Query 4042 CCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAGATTAA 4100 || || || ||| ||| | ||| | |||||| |||| ||| || ||| |||| Sbjct 4615 CCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAA 4557 Query 4101 AGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTATCATGA 4160 |||| ||| | ||||||||| | ||| || ||| | ||||| Sbjct 4556 GATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCT 4497 Query 4161 TTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAATCTTCA 4220 | | | || ||||| ||| || | || ||| || |||||| || | || Sbjct 4496 TCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG---ATTTGCA 4449 Query 4221 GGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCAGTTGCT 4280 ||| | ||| |||| || || || ||||| || |||||||| |||||| | Sbjct 4448 AGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTT 4389 Query 4281 ACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTACTGTACG 4340 |||||||| | |||| | | ||| || | ||||||||| || |||| || || Sbjct 4388 GCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCG 4329 Query 4341 TGATTCCATTATGACCTC 4358 ||||| || ||||| || Sbjct 4328 CGATTCAATCATGACTTC 4311 Score = 453 bits (502), Expect = 4e-124 Identities = 555/756 (73%), Gaps = 51/756 (7%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 752 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 693 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 692 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 633 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 632 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 573 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 572 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 513 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 512 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 453 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 452 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 393 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGA--TATGAAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || | | | ||| ||| |||| Sbjct 392 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 333 Query 2972 -CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGCTC 2999 || || ||| ||||| |||||||| |||| Sbjct 332 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 273 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 272 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 213 Query 3058 G--AAATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 | ||||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 212 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 156 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 |||||| ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 155 ATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 98 Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCG 3233 |||||||||||| ||||| ||| | || || ||||| ||| | |||||||| || |||| Sbjct 97 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 38 Query 3234 TCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTT 3269 |||||| | |||||||| |||| || || |||| Sbjct 37 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTT 2 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 2028 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1969 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 1968 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1909 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1908 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1849 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1848 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1791 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1790 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1732 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 1731 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1672 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 1671 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1634 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 3137 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 3078 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 3077 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 3023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362174428112