Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900012385.1_202016-07-08] 4,708 sequences; 27,248,364 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq1678 554 2e-154 >seq1678 Length=5452 Score = 554 bits (614), Expect = 2e-154 Identities = 825/1164 (71%), Gaps = 22/1164 (2%) Strand=Plus/Minus Query 3204 GTTGGCGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGAT 3263 ||||||||| | ||||||||||| |||||||||| | ||||||||||||| || || Sbjct 5452 GTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGAC 5393 Query 3264 TTTTTCACTTTCTATATTCCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATG 3323 |||| ||||| ||| | || ||||| || ||||||||||| ||||||||| | || ||| Sbjct 5392 ATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATG 5333 Query 3324 CGTGATGGTGTTGATGCCGCACCACTCCCTTCCGTTACTACTACTCAGTATCCGGATGAC 3383 ||||||||| ||||| | || ||||| | |||| |||||| ||| || | Sbjct 5332 AAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCAT 5273 Query 3384 GCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAG 3443 || | || | |||| || ||| ||| | | ||| || |||||| |||| |||| Sbjct 5272 GCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAG 5213 Query 3444 TCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAA 3503 |||| ||||||| ||||| |||||||| ||||||||||||||||| ||||| || Sbjct 5212 GGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAG 5153 Query 3504 GCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCGCTATGGATTCCGTTGCTGCCA 3559 ||||| ||| ||| ||| | | |||||| |||| ||||| |||||||||||||| Sbjct 5152 GCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCA 5097 Query 3560 TCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGG 3619 ||| |||| |||||| ||||||| |||||||| || ||| |||| || |||||| Sbjct 5096 TCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGAC 5037 Query 3620 CATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCATAC 3679 | | | || || ||||| ||||||||| |||| || |||||||| | | ||||| Sbjct 5036 GACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC 4977 Query 3680 TGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCTTTGGCGG 3739 ||| || || ||| ||| |||||||||||||| | ||||||||| || ||||| || Sbjct 4976 TGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGG 4917 Query 3740 TTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGATTTCTGGGC 3799 | |||||| ||||| || || ||||| || || ||||| |||| | | || ||||||| Sbjct 4916 TAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGC 4857 Query 3800 TTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGGTCGAGT 3859 || || || || ||||| || || |||||| | || | || |||||||| ||||| || Sbjct 4856 ATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGT 4797 Query 3860 CCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGTCATGAT 3919 |||||||| | |||||| || ||||| || ||||| || || |||||||| ||| | Sbjct 4796 TCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTT 4737 Query 3920 GACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGG 3979 ||| | ||| ||||| || ||||||| || ||| ||| || ||| | Sbjct 4736 TACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGC 4677 Query 3980 TCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCC 4039 | | ||||||||||||||| |||| || ||||| | |||| ||| || ||||| Sbjct 4676 TAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCC 4617 Query 4040 GCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAA 4099 ||| ||||| |||||| ||||| |||||||| |||| | || | ||| |||| Sbjct 4616 GCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAA 4557 Query 4100 GGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGT 4158 | |||| ||| | ||||||||| | || |||||| || | ||||| Sbjct 4556 GATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACC 4498 Query 4159 TACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTC 4218 | |||||||| || || ||| || | || ||| || ||||||| | Sbjct 4497 TTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--A 4449 Query 4219 AGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGC 4278 |||| || | || ||| ||| |||| ||| | ||||||||||| |||||| Sbjct 4448 AGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGT 4390 Query 4279 TTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTC 4338 | |||||||||| ||||| | | |||||| | |||||||| || | || || || Sbjct 4389 TGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTC 4330 Query 4339 GTGATTCTATTATGACCTCTTGAT 4362 | ||||| || ||||| || |||| Sbjct 4329 GCGATTCAATCATGACTTCGTGAT 4306 Score = 457 bits (506), Expect = 4e-125 Identities = 558/758 (74%), Gaps = 51/758 (7%) Strand=Plus/Minus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 754 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 695 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 694 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 635 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 634 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 575 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 574 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 515 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 514 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 455 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 454 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 395 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT- 2970 | | ||||| |||||||| ||| | ||| ||| |||| | | ||| ||| |||| Sbjct 394 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTT 336 Query 2971 ----CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTG 2995 || || ||| ||||| |||||||| | Sbjct 335 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 276 Query 2996 CCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGC--TCTTT 3053 | || |||||||||||||| ||| || |||||||| | |||||| | | || Sbjct 275 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 216 Query 3054 AAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTC 3112 |||| ||||| ||||||||| | |||||| ||| || ||| ||||||||| Sbjct 215 GAGGATAAATT--ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC 158 Query 3113 TCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCT 3170 ||||||| ||| | ||| | || |||||||||| | | || ||||| ||||| Sbjct 157 CCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCG 100 Query 3171 GTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTG 3230 ||||| |||||||| ||||| ||| | || || ||||||||| | ||||||||||| || Sbjct 99 GTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTG 40 Query 3231 CGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTT 3268 |||||||| | ||||||||||||| || || |||| Sbjct 39 CGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTT 2 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 2028 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 1969 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 1968 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 1909 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 1908 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1849 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1848 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1791 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1790 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1732 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 1731 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1672 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 1671 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1634 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 3322 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 3263 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 3262 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 3208 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 3207 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 3149 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 3148 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 3090 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 3089 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 3030 Query 5762 CGTCCAT 5768 |||| || Sbjct 3029 CGTCTAT 3023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384573241696