Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016685.1_202016-07-08] 4,558 sequences; 26,906,941 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq4388 524 3e-145 >seq4388 Length=5448 Score = 524 bits (580), Expect = 3e-145 Identities = 615/828 (74%), Gaps = 54/828 (7%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 848 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 789 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 788 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 729 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 728 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 669 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 668 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 609 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858 || |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||| Sbjct 608 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 549 Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918 |||| ||| ||||| | |||||| || || | | | ||| || ||||| || Sbjct 548 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 489 Query 2919 GCTCGTCAGAAATTACGCGCAAATGG---GTTGAAATG---ATATGAAAAAAGCACGT-- 2970 | ||||| |||||||| ||| | || | || |||| | | | ||||| |||| Sbjct 488 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 431 Query 2971 ---CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGC 2996 || || ||| ||||| |||||||| || Sbjct 430 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 371 Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATT-ATGGGCCTTCGGGCCC---CTTA 3052 ||| || ||||||||||| ||| || |||||||| ||| |||||| ||| ||| Sbjct 370 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 311 Query 3053 AGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCA 3112 ||||| | | ||||||||| | |||||| || || ||| |||||| || || Sbjct 310 AGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA 251 Query 3113 TCTT-GCTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGT 3169 |||| |||| ||| ||| | || ||||||||| | | || ||||| ||||| || Sbjct 250 TCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 194 Query 3170 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCG 3229 |||||||||||| ||||| ||| | || || ||||| ||| | ||||||||||| |||| Sbjct 193 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 134 Query 3230 TCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCA 3289 |||||| | || ||||| |||| || ||| |||| ||||| ||| | || |||||||| Sbjct 133 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 74 Query 3290 TGTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGC 3337 ||||||||||| ||||||||| | || ||| ||||||||| |||| Sbjct 73 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGC 26 Score = 459 bits (508), Expect = 1e-125 Identities = 738/1054 (70%), Gaps = 16/1054 (2%) Strand=Plus/Minus Query 3303 CAGTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACT 3362 ||||||||| | || ||| ||||||||| |||| | || || || | |||| ||| Sbjct 5446 CAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT 5387 Query 3363 ACTAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATT 3422 ||| ||| || |||| | || | |||| || ||| ||| | | ||| || Sbjct 5386 ACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATC 5327 Query 3423 CCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGG 3482 |||||| |||| |||| |||| ||||||| ||||| |||||||| ||||||||| Sbjct 5326 CCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGG 5267 Query 3483 ATGCCTGAGCGTACTGAAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGG 3541 |||||||| ||||| || ||||| ||| | |||| ||| |||||| |||||||||| Sbjct 5266 ATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGG 5208 Query 3542 ATTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCT 3601 |||||||| |||||||| |||| |||||| ||||||| |||||||| || ||| |||| Sbjct 5207 TTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCT 5148 Query 3602 CGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTA 3661 || |||||| | | | || || ||||| ||||||||| |||| || ||||| Sbjct 5147 TTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTA 5088 Query 3662 TGCGCAGCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTAT 3721 ||| | | || ||||| || || ||| ||| || ||||||||||||| ||||||||| Sbjct 5087 TGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 5028 Query 3722 CTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCA 3781 || ||||| ||| |||||| ||||| || || ||||| || || ||||| |||| Sbjct 5027 TTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCG 4968 Query 3782 TACCGATTTTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACA 3841 | || | ||||| || || || || ||||| || || |||||| | || | || || Sbjct 4967 CTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCA 4908 Query 3842 GTTTTCGGGGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGA 3901 |||||| || || ||||||||||| | |||||| || |||||||| ||||| || ||||| Sbjct 4907 GTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGA 4848 Query 3902 GCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCA 3961 |||||| ||| | ||| | ||| ||||| || ||||||| || ||| Sbjct 4847 GCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGAT 4788 Query 3962 TCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTT 4021 ||| || ||| | | | ||||||||||||||| ||||||| ||||| | ||| Sbjct 4787 TCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTT 4728 Query 4022 GATTGGTAATTTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCC 4081 | ||| || |||||||||||||| |||||| |||| |||||||| |||| | Sbjct 4727 GTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTC 4668 Query 4082 GGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAA 4141 | | ||| ||||| |||| ||| | ||||||||| | || |||||| Sbjct 4667 GTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-T 4609 Query 4142 CTAC-AAGTATCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTA 4200 || | ||||| | ||||| || ||||| ||| || | || ||| || Sbjct 4608 CTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTT 4558 Query 4201 GTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCC 4260 ||||||| | |||| || | || ||| ||| |||| ||| | ||||||| Sbjct 4557 CTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCC 4501 Query 4261 AGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCC 4320 |||| |||||| | |||||||||| ||||| | | |||||| | ||||||||| Sbjct 4500 AGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA 4441 Query 4321 ATATTCCTACTGTTCGTGATTCTATTATGACCTC 4354 || | || || ||| ||||| || ||||| || Sbjct 4440 ATCTGCCGACCACTCGCGATTCAATCATGACTTC 4407 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 2124 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2065 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 2064 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2005 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 2004 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1945 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 1944 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1887 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 1886 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1828 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 1827 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 1770 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 1769 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1730 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 3613 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 3556 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 3555 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 3499 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 3498 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 3452 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 3451 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 3396 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 3395 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 3336 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 3335 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 3279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19368606775336