Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq2581 628 1e-176 >seq2581 Length=5468 Score = 628 bits (696), Expect = 1e-176 Identities = 1120/1630 (69%), Gaps = 71/1630 (4%) Strand=Plus/Plus Query 2779 TGCCTCGTTATGGAAGGCGCGGAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCG 2838 || ||| | ||||||||||| || |||| ||||||||||| |||||||||||||| ||| Sbjct 2 TGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCG 61 Query 2839 GTTAACGCCGCTGAGCTCTTCGCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACT 2898 ||||| |||||||| | ||||||| ||| ||||| | |||||| || || | Sbjct 62 GTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTT 121 Query 2899 GTAATGGATGCCGAGGAAAATGCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGATAT 2958 | | || || || ||||| | ||||| |||||||| ||| | ||| ||| || || | Sbjct 122 CTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGT 181 Query 2959 G--AAG--AAAGCACGT-----CGTTCTCC-TAGTCGTC--------------------- 2987 ||| ||| |||| || || || | |||||| Sbjct 182 CTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTA 241 Query 2988 ---------GTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGG 3038 ||||||| ||||| || ||||||||||| ||| || |||||||| || Sbjct 242 AAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGG 301 Query 3039 CCCTTCGGGGCCTT--TTAAGGA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAAC 3094 |||||| |||| || |||| |||| ||||||||| | |||||| ||| || | Sbjct 302 GGCTTCGGCCCCTTACTTGAGGATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGC 358 Query 3095 GTGAAATTGTTGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAA 3152 || |||||| || ||||||| ||| | ||| | || | |||||||||| | Sbjct 359 GTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTAT 416 Query 3153 GACTGTTTCATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGC 3212 || ||||| ||||| |||||||||||||| ||||| ||| | || || ||||| || Sbjct 417 TACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGC 476 Query 3213 TTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCAC 3272 | | |||||||| || |||||||||| | |||||||| |||| || || |||| || Sbjct 477 TCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTAC 536 Query 3273 CTTCTACATTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGG 3332 || || | || |||||||| |||||||| || ||||||||| |||| ||| ||||| Sbjct 537 TTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGG 596 Query 3333 TGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTA 3392 ||||||||| ||||| || |||||| | | | ||| |||||||| | || Sbjct 597 TGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTT 656 Query 3393 TGTAGGTACTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTA 3449 | | || || ||| |||| | ||||| || |||||| |||| |||| | || Sbjct 657 TCTTGGCACGATTAACCCTGATACCAATAA---AATCCCTAAGCATTTGTTTCAGGGTTA 713 Query 3450 TCTGAACATTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAA 3509 | |||| || || || |||||||| || |||||||||||||| ||||||||||| || Sbjct 714 TTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAA 773 Query 3510 CCCGTCTAATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAA 3569 ||| | | |||||| | ||||||||||||||| | |||||||||||||| || ||||| Sbjct 774 CCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAA 833 Query 3570 TATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAG 3629 |||||| |||||||||| ||||| || || | | || ||||| | | | Sbjct 834 CATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTAC 893 Query 3630 CAATTCCATTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGA 3689 || || ||||| ||||||||| ||||||| |||||||| | | || ||||| || || Sbjct 894 CACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA 953 Query 3690 GCGTACTTACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTC 3749 ||| |||||| ||||||||||||| ||||||||| || ||||| ||| |||||| Sbjct 954 ACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTC 1013 Query 3750 CTATGATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTA 3809 ||||| || || ||||| || || ||||| |||| | | | ||||||| || || || Sbjct 1014 TTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTA 1073 Query 3810 CGACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGAC 3869 || ||||| || || |||||| | || | || || || |||||||| || || ||||| Sbjct 1074 TGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGAC 1133 Query 3870 GTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGGC 3929 | |||||| || |||||||| ||||| || ||||||||||| ||| | ||| | || Sbjct 1134 CTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGC 1193 Query 3930 TCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTGCTGGTAAGTCTCA 3989 || |||| || ||||||| | ||| || || ||| | ||| | Sbjct 1194 GCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGC 1253 Query 3990 GTTAACCTATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACTTGCCTCCTCGCGA 4049 || || |||||||| ||||||||||||| | | || ||| |||||||| || || || Sbjct 1254 TTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGA 1313 Query 4050 GATTAGTTATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAGATTAAAGTTGCCG 4108 ||| ||| | ||| | |||||| |||| ||| || ||| |||| |||| | Sbjct 1314 AATT-TCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTG 1372 Query 4109 AGTCTATTTGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTATCATGATTTGCATG 4168 || | ||||||||| | ||| || ||| | ||||| | | | | Sbjct 1373 AGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAG 1432 Query 4169 GATTCCCGTTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAATCTTCAGGAAGCTA 4228 | ||||| ||| || | || ||| || |||||| || | || ||| Sbjct 1433 GCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTG---ATTTGCAAGAACGCG 1480 Query 4229 TCCTTGTTCGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCAGTTGCTACAGTGGA 4288 | ||| |||| || || || ||||| || |||||||| |||||| | ||||||| Sbjct 1481 TACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGA 1540 Query 4289 ACAAACAGGCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTACTGTACGTGATTCCA 4348 | | |||| | | ||| || | ||||||||| || |||| || || ||||| | Sbjct 1541 ATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAA 1600 Query 4349 TTATGACCTC 4358 | ||||| || Sbjct 1601 TCATGACTTC 1610 Score = 343 bits (380), Expect = 6e-91 Identities = 252/293 (86%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 5169 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 5228 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 5229 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 5288 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 5289 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 5348 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 5349 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 5408 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGA 2852 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| Sbjct 5409 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGA 5461 Score = 174 bits (192), Expect = 6e-40 Identities = 280/398 (70%), Gaps = 6/398 (2%) Strand=Plus/Plus Query 1293 GGCTGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1352 || ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| || Sbjct 3893 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 3952 Query 1353 GAAAACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1412 || || ||||||||| | ||||| ||||| | | ||||||| ||||| || Sbjct 3953 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 4012 Query 1413 GAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1472 || ||||| || || ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 4013 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 4072 Query 1473 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1530 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 4073 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 4130 Query 1531 CTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1590 || || || |||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 4131 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 4189 Query 1591 CG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1649 | || | | |||||||||||| | || || || || |||||||| || Sbjct 4190 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 4249 Query 1650 GACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGTTGA 1687 ||||||| ||| || |||||| ||||||||||||| Sbjct 4250 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 4287 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 2784 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 2843 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 2844 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 2898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362388560900