Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001331.1 Length=7349 Score E Sequences producing significant alignments: (Bits) Value seq79325 170 9e-39 seq88410 109 3e-20 seq64734 84.2 1e-12 >seq79325 Length=446 Score = 170 bits (188), Expect = 9e-39 Identities = 286/407 (70%), Gaps = 14/407 (3%) Strand=Plus/Plus Query 4503 CAGTTCACCGACTTGTCAGGCGTGCGGATCCTGCGGTGCGGCGTGGACACCGTGCGGCAG 4562 ||| ||||||| |||||||||| || | ||||| || ||||| || || ||||| ||| Sbjct 50 CAGATCACCGATCTGTCAGGCGTACGCCTGCTGCGCTGTGGCGTCGATACGGTGCGTCAG 109 Query 4563 TTGTACAACGGCAAGCTCCGGCCGGAAGTCATGGCGCTGTTTGACCTGTCGGTGGATGTG 4622 |||| | ||| ||| || || ||| |||||||||| ||| | | | | | Sbjct 110 CTGTATCAGGGCCTGCTGCG-CCTGAA-TCATGGCGCT---TGAAAAGCCCGGCGCCATC 164 Query 4623 GTCGAGTTCGCCGGCTACGAATGGTCCAAGGGCCGTATCGGTCGCGACTCTGGCTATCAG 4682 ||||| ||||||||| | ||| | ||| || |||| ||||| || ||||| ||| Sbjct 165 GTCGATTTCGCCGGCCAGCGCTGGCACTCGGGACGCGTCGGCCGCGATTCGGGCTACCAG 224 Query 4683 TACCGCCTGCAGAACGCCGAAATGGGCCTGATCCTGCTGATCAAGAACCACAACATCAAG 4742 ||| ||||||||||| || |||| | ||||| |||||||||||| |||| ||| Sbjct 225 TACAAGCTGCAGAACGCTGATCTGGGGTTCATCCTCCTGATCAAGAACTTCAACGCCAAA 284 Query 4743 GTCGACACCATTGGCTCGCACCTCAAGATCGAGGTGTCGCCCCACGCCATTGACGGCGCC 4802 |||||| || || | | ||||| || ||||||||||||||||| ||||| ||| || | Sbjct 285 ATCGACAGCA-TGACCCTCACCTGAAAATCGAGGTGTCGCCCCATGCCATCGACAGC-CT 342 Query 4803 GACCC----GCGTATCCTCCAGGGCGTGCTGGATGACCTGGCCGCAGCGGTGCTGAGTCA 4858 || || |||| || || | | || || || ||| |||||||||| | Sbjct 343 GAGCCCTGAGCGT---CTGCAAGACCGCCTCGACTACTACGCCCAGGCGGTGCTGACGAA 399 Query 4859 CTGCGAGACCAACCAAGCAGCTGTGCATATCGCGCTGGATGTGCAGG 4905 | || | |||||| || |||||||| |||||||| |||||| Sbjct 400 CGTCGCGCGCAACCAGTGTGCGGTGCATATTGCGCTGGACCTGCAGG 446 >seq88410 Length=786 Score = 109 bits (120), Expect = 3e-20 Identities = 198/283 (70%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 4668 GACTCTGGCTATCAGTACCGCCTGCAGAACGCCGAAATGGGCCTGATCCTGCTGATCAAG 4727 || |||||||| |||||| |||||||| || || ||||| | ||||||||| | ||| Sbjct 476 GATTCTGGCTACCAGTACAAGCTGCAGAATGCTGACCTGGGCATCATCCTGCTGGTGAAG 535 Query 4728 AACCACAACATCAAGGTCGACACCATTGGCTCGCACCTCAAGATCGAGGTGTCGCCCCAC 4787 ||| |||| ||| |||| | ||| || | ||||| || ||||||||||| || || Sbjct 536 AACTTCAACGCCAAA-TCGAGAACATCGGGCCACACCTGAA-ATCGAGGTGTCTCCGCAT 593 Query 4788 GCCATTGACGGCGCCGACCCGCGTATCCTCCAGGGCGTGCTGGATGACCTGGCC-GCAGC 4846 || || ||| | |||| | ||| |||| |||||| || ||| || | Sbjct 594 GCTATCGACCAGTTCTGCCCGAG-CGCCTGCAGGAACGCCTGGATTACTACGCCAGCCAC 652 Query 4847 GGTGCTGAGTCACTGCGAGACCAACCAAGCAGCTGTGCATATCGCGCTGGATGTGCAGGG 4906 || |||| || |||| ||||||| ||||| || ||||||| || ||||||| Sbjct 653 -GTTCTGACCAACGTCGAGCGCAACCAATGCGCTGTCCACCTCGCGCTAGACCTGCAGGG 711 Query 4907 CTGGACGCCTCCGGCTGATCTCGTTGATCGCATGCACTGCCGC 4949 ||| || || || ||||| || | ||||||||||||||| Sbjct 712 ATGGCAACCGCCCGCCGATCTGGTCGCCCGCATGCACTGCCGC 754 >seq64734 Length=523 Score = 84.2 bits (92), Expect = 1e-12 Identities = 128/181 (71%), Gaps = 1/181 (1%) Strand=Plus/Plus Query 4505 GTTCACCGACTTGTCAGGCGTGCGGATCCTGCGGTGCGGCGTGGACACCGTGCGGCAGTT 4564 ||| ||| || |||||| ||| || | || || || || ||||||||||| || ||| | Sbjct 337 GTTTACCAACCTGTCAGCCGTTCGCCTGCTTCGCTGTGG-GTGGACACCGTCCGCCAGCT 395 Query 4565 GTACAACGGCAAGCTCCGGCCGGAAGTCATGGCGCTGTTTGACCTGTCGGTGGATGTGGT 4624 ||| ||| | |||| || ||| |||||||||||||||| | ||| || | ||| Sbjct 396 TTACCGCGGGCTGATCCGCCCTGAAATCATGGCGCTGTTTGAAAAGCCGGGGGCTACGGT 455 Query 4625 CGAGTTCGCCGGCTACGAATGGTCCAAGGGCCGTATCGGTCGCGACTCTGGCTATCAGTA 4684 |||||| |||||| | ||| | |||||| | || ||||| || || ||||| Sbjct 456 CGAGTTTGCCGGCCAGCTCTGGCACGCGGGCCGCGTGGGCAAGGACTCGGGTTACCAGTA 515 Query 4685 C 4685 | Sbjct 516 C 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23367296179600