Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001332.1 Length=6744 Score E Sequences producing significant alignments: (Bits) Value seq77338 289 1e-74 seq98551 226 1e-55 seq74288 136 2e-28 seq107798 87.8 8e-14 >seq77338 Length=471 Score = 289 bits (320), Expect = 1e-74 Identities = 322/426 (76%), Gaps = 9/426 (2%) Strand=Plus/Plus Query 1703 TGCTCTTTCTACTGCTGGCGGTAGCTTCGGTATCTTTAACGGT-AACATTCTGGCGTTAT 1761 ||| || || ||||| |||||| || || ||||| || || |||||||| || ||| Sbjct 4 TGCACTCTCGACTGCCGGCGGTTCATTTGGCATCTTCAATGGGCAACATTCTTTCGCTAT 63 Query 1762 CTCTCCAGGCTGTTCAGAGTGATTCTAACTCTAAGGTTATCTCTACCCCTCGCATCCTCA 1821 | || ||||| ||| ||| |||||| | ||| ||| || | || ||||||||||| |||| Sbjct 64 CCCTTCAGGCAGTTAAGAATGATTCGAGCTCGAAG-TTCTTTCAACCCCTCGCATTCTCA 122 Query 1822 CGCAGTCCGGCCAGAGTGGTTATATTTCAGTTGGCCAGAATGTTCCTTTTGTGACAGGTA 1881 | |||||||| || | |||||||| || ||||||||||| || || ||||| ||||||| Sbjct 123 CTCAGTCCGGACAAACCGGTTATATCTCTGTTGGCCAGAACGTCCCGTTTGTCACAGGTA 182 Query 1882 AAGTCACTGGCGAGGCTGCAAGCGTTAATAATCCTTTCCAGACAATCGAGCGCCGCGACG 1941 | || |||||||| || || | ||| |||||||| || || || || || || || |||| Sbjct 183 AGGTTACTGGCGAAGCAGCTAACGTAAATAATCCGTTTCAAACCATTGAACGACGTGACG 242 Query 1942 TAGGCGTATCACTAAAGGTAACGCCGGTTGTTATGGGAAATGGTCAGTTAGTTCTCACCA 2001 | ||||| ||||| ||||| || || ||||||||||| || || ||| | ||| | |||| Sbjct 243 TCGGCGTTTCACTCAAGGTTACCCCCGTTGTTATGGGTAACGGCCAGCTCGTTTTGACCA 302 Query 2002 TCGATACTAAAGCCGACTCTCTCAGCAATCAGGCGATTGCCTCTGACATCATTACCAATC 2061 |||| | ||||| || || |||||||| | | ||| ||| || || || |||| Sbjct 303 TCGACTCAAAAGCAGATTCACTCAGCAAAGATACTGCAGCCAGTGATATAATCACTAATC 362 Query 2062 AGCGCCAGATACAAACCACCGTTCAGATTAAAGACGGTCAGACCCTGCTTTTA---GGCG 2118 |||| |||||||| || ||||| ||||| || || || |||| ||||||| || | Sbjct 363 AGCGTCAGATACAGACAACCGTCCAGATAAAGGATGGCCAGA----GCTTTTACTCGGTG 418 Query 2119 GCCTGA 2124 |||||| Sbjct 419 GCCTGA 424 >seq98551 Length=555 Score = 226 bits (250), Expect = 1e-55 Identities = 269/361 (75%), Gaps = 3/361 (1%) Strand=Plus/Minus Query 1365 CCTGCTGTACCTGCCGATCTCACGGTACGTAATTTCAACGTGACGCGCGTTCGTTCTTCT 1424 ||||| | ||||||||| | | || ||||| ||||| | ||||| || |||||||| Sbjct 458 CCTGCCATTCCTGCCGATTTGATCGTCCGTAACTTCAAACTTACGCGTGTCCGTTCTTCC 399 Query 1425 GACGTTCTGCCGCTGGCTAAGATTTTCGTTGATTCAAATGGCGGCGGTAATGTCGTCGAT 1484 || ||| ||||||||| |||||| || | ||||| || ||||||||||| || || ||| Sbjct 398 GATGTTATGCCGCTGGTTAAGATATTTATAGATTCTAACGGCGGCGGTAACGTGGTTGAT 339 Query 1485 TACCCAGGCAATAACAGTCTTGTTGTTTCCGGCTCAGCTCAGGTTATGCCTGCTTTATCC 1544 ||| | |||||||||||||| ||||| |||| ||||| | ||| ||| | | Sbjct 338 TACTCCGGCAATAACAGTCTGGTTGTCTCCGCATCAGCCTCTATCATGGATGCGATGACT 279 Query 1545 GATTTCATTACGTCAATTGATGTTGCCCGCGAACAGGTTCTGATTCAGTCCCTGATGTTT 1604 ||||| || ||| |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct 278 GATTTTGTTCAGTCCATTGATGTGGCACGCGATCAGGTTCTGATCCAATCACTGATGTTT 219 Query 1605 GAAACCAGTGTTTCTAATGGCGTGGATCTTTCTTTTGC-GCTGGCTCTAGCTTCTGGCGG 1663 ||||||| | |||| ||| | || ||||| || || || || ||| | || || || Sbjct 218 GAAACCACGCTGACTAACGGCATTGACCTTTCGTTCGCTGCCGGTTCTGTCGTCCGGAGG 159 Query 1664 TAAAGTTGCAGGCGGTTTTAATACCTCAGCTCTCGGCACTGCTCTTTCTACTGCTGGCGG 1723 || || || || || || ||||| || ||||||| | ||| || || ||||| ||||| Sbjct 158 GAAGGTGGC-GGGGGCTTCAATACGTCTTCTCTCGGTAGTGCACTCTCGACTGC-GGCGG 101 Query 1724 T 1724 | Sbjct 100 T 100 >seq74288 Length=826 Score = 136 bits (150), Expect = 2e-28 Identities = 333/494 (67%), Gaps = 32/494 (6%) Strand=Plus/Minus Query 4460 TGAACTAATTCACGTAGTAATAGCTCTCGGCCTCGTTATTTCCTTCGGTTTGGGTGCTAT 4519 |||| | |||||| | || || ||||| || || ||||||| || || | || || || Sbjct 756 TGAATTTATTCACATTGTTATTGCTCTTGGTCTTGTTATTTGTTTTGGCCTTGGAGCAAT 697 Query 4520 TACTGCTGGGGTACTCCGATGATTGACTATGTTGGTTTATTCATTGGCGCTTATATAATG 4579 |||||||| || |||| |||| || || || || |||||| || || ||| | || Sbjct 696 AACTGCTGGAGTGTTCCGCTGATGGATTACGTCTCTT-ATTCATCGGAGCATATGTTCTG 638 Query 4580 GGCT-TCGCCCTTTTCTATGGCATAGGATTCTTTAAATCCATTGC---TGAACGCATCGT 4635 |||| | | | |||||| ||||||| | || ||| | || | | || || || Sbjct 637 GGCTATTGTCTTTTTCT--GGCATAGCCTATTTCAAAGACCTTTCATCTAAA---ATTGT 583 Query 4636 TTAATTAAGGAATACACATGA-GCGTTATTACTAAAGTTGCTGCTGCTAAAAACAAAATC 4694 |||| || | || || ||||| || | || || | |||| |||||| Sbjct 582 TTAAGGAAATATTA----TGTCGCGTTTTTC----ACTT-CTTCGCTTAAAGCCAAAATA 532 Query 4695 GTTGTTGGTGCTGGCCTGCTGATGGCTTCTGCTGGCGCGTTCGCTGCTGATGACGGTACT 4754 | | ||||| || || |||||||||| || | ||||| |||| | Sbjct 531 GCAACCGCTGCTGTACTCCTTGCTTCTTCTGCTGGGGCTATGGCTGCCGATGGCA----- 477 Query 4755 TCTACCGCTACCAGCTACGCTACTGAAGCAATGAACAGCCTGAAAACTCAGGCAACTGAT 4814 |||| ||||||| ||| || | || ||| ||| ||||| ||||| ||||| ||| Sbjct 476 -CTACAGCTACCAATTACACTGCAGACGCATGGAATAGCCTTAAAACAACTGCAACCGAT 418 Query 4815 CTCATTGATCAGACGTGGCCTGTTGTAACTAGCGTTGCC-GTTGCTGGTCTGGCAATTCG 4873 | || |||| | |||||| ||||||| |||| |||||||| || | ||||| Sbjct 417 ATGATCTCTCAGGCATGGCCTATTGTAAC---CGTTATGTGTTGCTGGCCTTTCTATTCG 361 Query 4874 TCTTTTCAAGAAATTCTCTTCTAAAGCTGTTTAATATTCAGCGTTTTCAAGGGGCGCT-- 4931 ||||||||||| ||||||||||| || ||||||| ||| | | || ||||||| Sbjct 360 CCTTTTCAAGAAGTTCTCTTCTAAGGCGGTTTAATTTTCTCTCTGCTTAATGGGCGCTGA 301 Query 4932 ATTGCGCCCTTTTT 4945 |||||||||||||| Sbjct 300 ATTGCGCCCTTTTT 287 >seq107798 Length=299 Score = 87.8 bits (96), Expect = 8e-14 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 3250 GGTTCTGACGGTAATGGGAAAGCCACTCATTTATACGTTGATGGTAACCCGTCAAAGTGG 3309 || ||||||||| | || || |||||| | ||||||||||| ||||| ||||||| Sbjct 55 GGATCTGACGGTGAAGGTCGGGCAACTCATCTCTACGTTGATGGCAACCCATCAAAGTTT 114 Query 3310 TTGCAGGGTCATAATATCGTTGGAAGCGACGATCTCAACGGCCTTATGATTGCTTTTTAC 3369 |||||||| || | | | || ||| || | | ||||| || | || ||| Sbjct 115 TTGCAGGGGCACTCTGTTATCGGTTCCGATGACTTGCAAGGCCTGGTGTTAACTGCTTAT 174 Query 3370 GCTCGTATGTTGTCACTACTCAATATACCTCACCATCTAGAATCGTATCGTCAGGTGCTT 3429 || | || ||||||| || |||| |||||| |||| ||| ||||||||||| | Sbjct 175 GCCAGAATACTGTCACTGCTTCATATTCCTCACGATCTTCTATCCTATCGTCAGGTAATG 234 Query 3430 TCTGGTCAGTACGAGCTAAAGCGCGTTGACATTAACTACATGT 3472 | || || | || | |||| | || ||||||||||||| Sbjct 235 GCAGGGCAATTTAAGATCTCGCGCATCGATATTAACTACATGT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21434134113600