Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq107332 374 5e-100 seq100997 109 3e-20 >seq107332 Length=555 Score = 374 bits (414), Expect = 5e-100 Identities = 355/447 (79%), Gaps = 5/447 (1%) Strand=Plus/Minus Query 6693 CATGTCAAAGTCAGCAGCGGGTACGGTCAGCCAGCCGGGGCGCAATGTCCGGGCAAAATC 6752 |||| |||| ||||||||||| ||| |||||||||||||||||| |||||||||||||| Sbjct 554 CATGCCAAAATCAGCAGCGGGCACGACCAGCCAGCCGGGGCGCAACGTCCGGGCAAAATC 495 Query 6753 AGGTTTAAACCGTTCGATACTGGA-TCAGGGCTGGTATGAAATGCGCCGCCAGCTTGAGT 6811 ||| | || ||||||||| | || ||||||||||| ||| ||||||||||||| || | Sbjct 494 AGGGCTGAATCGTTCGATATTAGAGTCAGGGCTGGTTTGAGCTGCGCCGCCAGCTCGAAT 435 Query 6812 ACAAACAGCTCTGGCGTGGAGGTCAGGTGCTTGCTGTTCCGCCAGCGTACACAAGCCAGC 6871 | || ||| ||||| || ||||||||| | || | | || || ||||| ||||||| Sbjct 434 ATAAGCAGGCATGGCGAGGCGGTCAGGTGTTGGCGATAAC-CCGGCCTACACGAGCCAGC 376 Query 6872 GTTGCGCGTGCTGTGGTCATACAGCGAAAGAAAACCGCCTGTCACAAAGTCAATTCAGAT 6931 ||||| || ||||| ||||| ||||| || ||||||| | | ||||| || || | || Sbjct 375 AGTGCGCCTGTTGTGGGCATACTGCGAAGGATAACCGCCAGACGCAAAGCCAGTTTA-AT 317 Query 6932 GCCAGGTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGTAACATTTTAGCGG 6991 || | ||||| ||| |||||||||||||| || |||||||| || |||||||||| Sbjct 316 GCGCTGCGTGTGGTTATGAGGCGAACGCCGATGTGAACGGCGCTCGCAATATTTTAGCGG 257 Query 6992 CGGGGCACGCCGTACTTGCCTGTGGAGGGACGATGCAGTCAGACCGCCCGTTGAAGCAGG 7051 |||| |||||||| ||||||||||| | |||| |||| ||||||| ||||||||| Sbjct 256 CGGGACACGCCGTTTAAGCCTGTGGAGGCGTGGTGCAATCAGGCCGCCCGATGAAGCAGG 197 Query 7052 AACCAGACGCTGAGCAATCAGCCGTCACCCACTAATGGGAATCCCCCTCCTGAGTCACGA 7111 |||| | ||| || | |||| ||||||| |||||||||||||||||||| | | ||| Sbjct 196 AACCCGGTACTGCGCGAGCAGCTATCACCCAGTAATGGGAATCCCCCTCCTGTGACGCGA 137 Query 7112 AGT-GCGAAGGTGGGGGAGGATGTCAA 7137 || || ||||||||| |||||||||| Sbjct 136 AGGCGCTAAGGTGGGG-AGGATGTCAA 111 >seq100997 Length=502 Score = 109 bits (120), Expect = 3e-20 Identities = 202/290 (70%), Gaps = 5/290 (2%) Strand=Plus/Plus Query 6529 AGCCGCAAGGTCAAATTCAGCAACAACTGGCAGAAGCA-GAAACGCAAAATACAGTGTCT 6587 |||||||||| || ||||||| ||||||| ||||| | || | | ||| | | Sbjct 184 AGCCGCAAGG-CAGATTCAGCCGCAACTGGAAGAAGGGCGCAAGCCCGCGTCCAGCGCAT 242 Query 6588 GCATTCCCGTATCGCAAATATCCGCAGAGACTACCTTCATAAAGTCACAACGACCGTCAG 6647 || || || |||| ||| |||| | |||||||| || || | | || || |||| Sbjct 243 TCACTCGCGCATCGGCAATGCCCGCCGCGACTACCTGCACAAGTGCTCCACCACGATCAG 302 Query 6648 CAAAAACCACGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGC 6707 | |||||||||| ||| | || ||||| ||| |||| |||| ||||| | || || Sbjct 303 CCAAAACCACGCGATGGTGTGTATCGAGGACTTGCAGGTACGCAATATGTCCAGATCGGC 362 Query 6708 AGCGGGTACGGTC-AGCCAGCCGGGGCGCAATGTCCGGGCAAAATCAGGTTTAAACCGTT 6766 || ||||||| | || | |||||| | || || ||||| || || || | ||| | Sbjct 363 GGCAGGTACGGCCGAGGC-GCCGGGAAGAAACGTTCGGGCCAAGTCTGGCCTGAACAGGG 421 Query 6767 CGATACTGGATCAGGGCTGGTATGAAATGCGCCGCCAGCT-TGAGTACAA 6815 | || || ||||||||||||| || | |||||||| || || ||||| Sbjct 422 CCATCCTCGATCAGGGCTGGTTCGAGTTCCGCCGCCAACTGGGACTACAA 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26898112845600