Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_002014.1 Length=6883 Score E Sequences producing significant alignments: (Bits) Value seq77338 279 2e-71 seq98551 206 1e-49 seq74288 181 5e-42 >seq77338 Length=471 Score = 279 bits (308), Expect = 2e-71 Identities = 347/470 (74%), Gaps = 4/470 (1%) Strand=Plus/Plus Query 5581 TGCACTTTCAACTGCTGGCGGTTCCTTCGGCATCTTTAACGGT-AATGTTTTAGCGTTAT 5639 |||||| || ||||| |||||||| || |||||||| || || || || | || ||| Sbjct 4 TGCACTCTCGACTGCCGGCGGTTCATTTGGCATCTTCAATGGGCAACATTCTTTCGCTAT 63 Query 5640 CCATTCAGGCGGTAAAAAATGACTCTAATTCAAAAGTTATTTCTACCCCGCGCATCCTGA 5699 || ||||||| || || ||||| || | || || ||| |||| ||||| ||||| || | Sbjct 64 CCCTTCAGGCAGTTAAGAATGATTCGAGCTCGAA-GTTCTTTCAACCCCTCGCATTCTCA 122 Query 5700 CGCAATCAGGTCAGACAGGTTACATCTCTGTAGGTCAAAATGTGCCGTTTGTCACTGGTA 5759 | || || || || || ||||| |||||||| || || || || ||||||||||| |||| Sbjct 123 CTCAGTCCGGACAAACCGGTTATATCTCTGTTGGCCAGAACGTCCCGTTTGTCACAGGTA 182 Query 5760 AGGTAACGGGTGAGGCTGCAAATGTTAACAACCCTTTCCAGACCATTGAGCGCCGCGATG 5819 |||| || || || || || || || || || || || || |||||||| || || || | Sbjct 183 AGGTTACTGGCGAAGCAGCTAACGTAAATAATCCGTTTCAAACCATTGAACGACGTGACG 242 Query 5820 TTGGTGTTTCTCTTAAGGTGACGCCTGTTGTCATGGGTAATGGTCAGCTTGTTCTTACCA 5879 | || ||||| || ||||| || || ||||| |||||||| || ||||| ||| | |||| Sbjct 243 TCGGCGTTTCACTCAAGGTTACCCCCGTTGTTATGGGTAACGGCCAGCTCGTTTTGACCA 302 Query 5880 TTGATACCAAAGCTGACTCCCTAACCAGTCAAATGACTGCTAGCGACATCATTACTAATC 5939 | || | ||||| || || || | || | | | || || || || || ||||||| Sbjct 303 TCGACTCAAAAGCAGATTCACTCAGCAAAGATACTGCAGCCAGTGATATAATCACTAATC 362 Query 5940 AGCGTCATATGCAAACGACAGTGCAGATAAAAGACGGTCAGACGCTTTTGCTTGGTGGTC 5999 ||||||| || || || || || |||||||| || || |||| |||||| || ||||| | Sbjct 363 AGCGTCAGATACAGACAACCGTCCAGATAAAGGATGGCCAGA-GCTTTTACTCGGTGGCC 421 Query 6000 TTATCGATTCCAATACAACTGA-CGGTAATCGCTCTGTACCTTGGTTTGA 6048 | | ||||||| ||| ||| ||||| || ||||| |||||||| Sbjct 422 TGACTGATTCCAGTACCCTTGATAACAAATCGTTCCGTACCCTGGTTTGA 471 >seq98551 Length=555 Score = 206 bits (228), Expect = 1e-49 Identities = 261/352 (74%), Gaps = 5/352 (1%) Strand=Plus/Minus Query 5258 GATCTTACCGTTCGCAATTTTAAGTTAACCCGCGTGCGTTCTTCTGACGTTCTTCCGCTT 5317 ||| | | ||| || || || || | || || || |||||||| || ||| | ||||| Sbjct 443 GATTTGATCGTCCGTAACTTCAAACTTACGCGTGTCCGTTCTTCCGATGTTATGCCGCTG 384 Query 5318 GCCAAAATCTTTGTCGATTCCAACGGTGGCGGCGATGTTATTGATTACCCAGGCAATAAC 5377 | || || ||| | ||||| ||||| ||||| | || |||||||| | ||||||||| Sbjct 383 GTTAAGATATTTATAGATTCTAACGGCGGCGGTAACGTGGTTGATTACTCCGGCAATAAC 324 Query 5378 AGCCTGTTGGTTTCTGGTTCTGCTGCTATCATGAATGCCCTGGCTGATTTCATTACGTCA 5437 || ||| | || || | || || |||||||| |||| || ||||||| || ||| Sbjct 323 AGTCTGGTTGTCTCCGCATCAGCCTCTATCATGGATGCGATGACTGATTTTGTTCAGTCC 264 Query 5438 ATCGACGTTGCCCGTGATCAGGTTCTTATTCAGTCGCTTATGTTTGAAACCA-GCTTAGT 5496 || || || || || ||||||||||| || || || || ||||||||||||| ||| | | Sbjct 263 ATTGATGTGGCACGCGATCAGGTTCTGATCCAATCACTGATGTTTGAAACCACGCTGACT 204 Query 5497 TAATGGCGTGGATCTTTCTTTTGCTGCCGGTTCTG-CTTCTGGTGATAAGGTCGCAGGCG 5555 || ||| | || ||||| || ||||||||||||| | || || | ||||| || || | Sbjct 203 -AACGGCATTGACCTTTCGTTCGCTGCCGGTTCTGTCGTCCGGAGGGAAGGTGGC-GGGG 146 Query 5556 GTTTCAATACATCTGCTCTTGGCACTGCACTTTCAACTGCTGGCGGTTCCTT 5607 | |||||||| ||| |||| || | |||||| || ||||| |||||||| || Sbjct 145 GCTTCAATACGTCTTCTCTCGGTAGTGCACTCTCGACTGC-GGCGGTTCATT 95 >seq74288 Length=826 Score = 181 bits (200), Expect = 5e-42 Identities = 331/469 (71%), Gaps = 18/469 (4%) Strand=Plus/Minus Query 1590 TTGTATTTGCTCTTGGCCTTGTTGTTTCATTTGGGTTAGGTGCAATTACTGCTGGAGTGT 1649 |||| |||||||||| |||||| ||| ||||| | || ||||| ||||||||||||| Sbjct 742 TTGTTATTGCTCTTGGTCTTGTTATTTGTTTTGGCCTTGGAGCAATAACTGCTGGAGTGT 683 Query 1650 TCCGATGATTGATTATGTTGGTTCTTTCCTCGGTGCATATTTCTTGGGCTTTGCCCTCTT 1709 |||| |||| ||||| || || ||| |||| |||||| | |||||| | || || Sbjct 682 TCCGCTGATGGATTACGTCTCTT-ATTCATCGGAGCATATGTTCTGGGCTATTGTCT-TT 625 Query 1710 TTATGGAATTGGTTTTTTCAAATCAATTTCGAATCGTATCATTTAAGGAAAATAAAATG- 1768 || ||| || | | ||||||| |||| | || ||||||| ||||| ||| Sbjct 624 TTCTGGCATAGCCTATTTCAAAGACCTTTCATCTAAAATTGTTTAAGG-AAATATTATGT 566 Query 1769 CGTGTTCTCTCTACCGTTTTAGCTGCTAAAAACAAAATTGCTCTGGGTGCTGCTACT--A 1826 || ||| | | | | || ||| |||| |||||| || | ||||| |||| Sbjct 565 CGCGTT---TTTCACTTCTTCGCT--TAAAGCCAAAATAGCAACCGCTGCTG-TACTCCT 512 Query 1827 TGCTGGTTTCTGCTGGTTCCTTCGCTGCTGAACCTAACGCAGCTACTAACTATGCTACCG 1886 |||| ||||||||| | | ||||| || | ||||||| || || || | | Sbjct 511 TGCT-TCTTCTGCTGGGGCTATGGCTGCCGATGGCACTACAGCTACCAATTACACTGCAG 453 Query 1887 AAGCAATGGACAGCCTTAAAACTCAGGCTATTGATCTCATTTCTCAGACTTGGCCTGTTG 1946 | ||| | | ||||||||||| || | ||| | || |||||| | |||||| ||| Sbjct 452 ACGCATGGAATAGCCTTAAAACAACTGCAACCGATATGATCTCTCAGGCATGGCCTATTG 393 Query 1947 TAACGACTGTTGTAGTTGCTGGTCTTGTAATTCGCCTCTTTAAGAAGTTCTCTTCTAAAG 2006 |||| | ||| |||||||| ||| |||||||| || ||||||||||||||||| | Sbjct 392 TAAC-CGTTATGT-GTTGCTGGCCTTTCTATTCGCCTTTTCAAGAAGTTCTCTTCTAAGG 335 Query 2007 CTGTTTAATTTTCAGCGTTATTTAAGGGGCGCT--ATTGCGCCCTTTTT 2053 | ||||||||||| | | |||| ||||||| |||||||||||||| Sbjct 334 CGGTTTAATTTTC-TCTCTGCTTAATGGGCGCTGAATTGCGCCCTTTTT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21878282092400