Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq27 489 6e-135 seq80 374 3e-100 seq149 120 1e-23 seq2469 105 3e-19 seq483 104 9e-19 seq906 102 3e-18 seq452 98.7 4e-17 seq1639 89.7 2e-14 >seq27 Length=3337 Score = 489 bits (542), Expect = 6e-135 Identities = 816/1176 (69%), Gaps = 20/1176 (2%) Strand=Plus/Minus Query 3187 TCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCGTCGTGGTTTAGCT 3246 ||||| ||| | || || ||||| ||| | |||||||| || |||||||||| | ||| Sbjct 3336 TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCT 3277 Query 3247 ATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCATGTTTATGGCGAC 3306 ||||| |||| || || |||| || || || | || |||||||| |||||||| || Sbjct 3276 ATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAA 3217 Query 3307 CAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCCTTCTGTTACTTGC 3366 ||||||||| |||| ||| |||||||||||||| ||||| || |||||| Sbjct 3216 CAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT 3157 Query 3367 AATCGCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCTG---CAAATAACCGT 3423 | | | ||| |||||||| | || | | || || ||| |||| | ||||| Sbjct 3156 ACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAA--- 3100 Query 3424 ATTCCTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAACTATTTCCGTGCCCCG 3483 || |||||| |||| |||| | ||| |||| || || || |||||||| || ||| Sbjct 3099 ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCG 3040 Query 3484 TGGATGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAGGATGATGCTCGTTAT 3543 ||||||||||| ||||||||||| ||||| | | |||||| | ||||||||||||||| Sbjct 3039 TGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTAT 2980 Query 3544 CGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTGCCTCCGGAAACCAAA 3603 | |||||||||||||| || ||||| |||||| |||||||||| ||||| || || | Sbjct 2979 GGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAG 2920 Query 3604 TTGGCTGAAGAAATGGGTATTGAAAGCAATTCCATTGATATTATGGGTTTGCAAGCCGCT 3663 | || ||||| | | | || || ||||| ||||||||| ||||||| ||| Sbjct 2919 CTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCT 2860 Query 3664 TATGCGCAGCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAGCGTTACCGTGATGTT 3723 ||||| | | || ||||| || || ||| |||||| ||||||||||||| ||||||| Sbjct 2859 TATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTT 2800 Query 3724 ATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATG 3783 || || ||||| ||| |||||| ||||| || || ||||| || || ||||| ||| Sbjct 2799 ATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATG 2740 Query 3784 CACACCGACTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGA 3843 | | | | ||||||| || || || || ||||| || || |||||| | || | || Sbjct 2739 CGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGC 2680 Query 3844 CAATTCTCTGGTCGAGTCCAGCAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCT 3903 || || |||||||| || || ||||| | |||||| || |||||||| ||||| || ||| Sbjct 2679 CAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCT 2620 Query 3904 GAGCATGGTGTCATGATGACTTTGGCTCTGATTCGCTTCCCGCCTATCAGTCCGTTGGAG 3963 |||||||| ||| | ||| | || || |||| || ||||||| | ||| Sbjct 2619 GAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAG 2560 Query 3964 CACCATTATCTTGCTGGTAAGTCTCAGTTAACCTATACCGACCTTGCTGGCGACCCGGCT 4023 || || ||| | ||| | || || |||||||| ||||||||||||| | | Sbjct 2559 ATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTT 2500 Query 4024 CTGATTGGTAACTTGCCTCCTCGCGAGATTAGTTATCGA-GATCTGTTCCGTGATGGTCG 4082 || ||| |||||||| || || || ||| ||| | ||| | |||||| |||| Sbjct 2499 TTGTATGGCAACTTGCCGCCGCGTGAAATT-TCTATGAAGGATGTTTTCCGTTCTGGTGA 2441 Query 4083 TTCTGGTATTAAGATTAAAGTTGCCGAGTCTATTTGGTATCGTACTCATCCTGATTACGT 4142 ||| || ||| |||| |||| ||| | ||||||||| | ||| || || Sbjct 2440 TTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGT 2381 Query 4143 TAACTTTAAGTATCATGATTTGCATGGATTCCCGTTCCTTGATGATGCGCCTGGTACATC 4202 | | ||||| | | | || ||||| ||| || | || ||| | Sbjct 2380 TTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------C 2330 Query 4203 TACTGGTGATAATCTTCAGGAAGCTATCCTTGTTCGTCATCAGGACTATGATGCTTGCTT 4262 | |||||| || | || ||| | ||| |||| || || || ||||| || || Sbjct 2329 TTCTGGTG---ATTTGCAAGAACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTT 2273 Query 4263 CCAGTCTCAGCAGTTGCTACAGTGGAACAAACAGGCTCGCTATAACGTTAGTGTTTATCG 4322 |||||| |||||| | |||||||| | |||| | | ||| || | |||||||| Sbjct 2272 CCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCG 2213 Query 4323 CCATATGCCTACTGTACGTGATTCCATTATGACCTC 4358 | || |||| || || ||||| || ||||| || Sbjct 2212 CAATCTGCCGACCACTCGCGATTCAATCATGACTTC 2177 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 1003 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 944 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 943 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 889 >seq80 Length=554 Score = 374 bits (414), Expect = 3e-100 Identities = 321/397 (81%), Gaps = 0/397 (0%) Strand=Plus/Minus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 478 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 419 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 418 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 359 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 358 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 299 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 298 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 239 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 238 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 179 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 178 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 119 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGAT 2956 | ||||| |||||||| ||| | ||| ||| || || Sbjct 118 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 82 >seq149 Length=297 Score = 120 bits (132), Expect = 1e-23 Identities = 196/278 (71%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1410 GCTGAAGGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCG 1469 || || ||||| || || ||||| || ||||||||||| ||| |||||||||| Sbjct 275 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 216 Query 1470 GAGTTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTC 1527 |||| ||| |||| | ||||||||||||| || | ||||| | ||||||| | Sbjct 215 GAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACAC 158 Query 1528 TTCCTTTGGGAAGTCATGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTA 1587 ||||| || || |||||||||||| ||||| |||||| ||| |||||| ||| Sbjct 157 TTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTA 99 Query 1588 ACTCG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAA 1646 | | | || | | |||||||||||| | || || || || |||||||| Sbjct 98 AATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACG 39 Query 1647 CATGACGCTTATTCCCGCAAAGGTTGGCTGTGGCCTGT 1684 || ||||||| ||| || |||||| |||||||||| Sbjct 38 CAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGT 1 >seq2469 Length=164 Score = 105 bits (116), Expect = 3e-19 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 3105 TGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCA 3162 |||||| || ||||||| ||| | ||| | || | |||||||||| | || ||||| Sbjct 153 TGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 96 Query 3163 TGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTT 3222 ||||| |||||||||||||| ||||| ||| | || || ||||| ||| | |||||| Sbjct 95 ACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 36 Query 3223 TCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTA 3256 || || |||||||||| | |||||||| |||| Sbjct 35 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA 2 >seq483 Length=183 Score = 104 bits (114), Expect = 9e-19 Identities = 129/173 (75%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 3105 TGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCA 3162 |||||| || ||||||| ||| | ||| | || | |||||||||| | || ||||| Sbjct 172 TGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 115 Query 3163 TGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTT 3222 ||||| ||||||||||||| ||||| ||| | || || ||||| ||| | |||||| Sbjct 114 ACTACTCCGGTTATCGCTGGCGCCTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 55 Query 3223 TCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTT 3275 || || |||||||||| | |||||||| |||| || || |||| || || Sbjct 54 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTT 2 >seq906 Length=183 Score = 102 bits (112), Expect = 3e-18 Identities = 117/154 (76%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 3105 TGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCA 3162 |||||| || ||||||| ||| | ||| | || | |||||||||| | || ||||| Sbjct 31 TGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 88 Query 3163 TGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTT 3222 |||| |||||||||||||| ||||| ||| | || || ||||| ||| | |||||| Sbjct 89 ACTGCTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 148 Query 3223 TCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTA 3256 || || |||||||||| | |||||||| |||| Sbjct 149 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA 182 >seq452 Length=183 Score = 98.7 bits (108), Expect = 4e-17 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 1296 TGGTTCTTCGTATTTGATACGTTAACCCTTGCTGATGACCGTTTGCAGGCTTTTAATGAA 1355 ||||| |||| ||||| || | || | ||||| ||||| || |||| ||| |||| Sbjct 183 TGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGAT 124 Query 1356 AACCCCAATGCTCTTCGTGATTATTTCAGGACTGTTGGTCGAGCTGTTCTGCGCGCTGAA 1415 || ||||||||| | ||||| ||||| | || ||||||| ||||| || || Sbjct 123 AATCCCAATGCTTTGCGTGACTATTTTCGTGCTATTGGTCGTATGGTTCTTGCTGCCGAG 64 Query 1416 GGTCGTTCGGTCAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAGTTT 1475 ||||| || || ||||| || ||||||||||| ||| |||||||||| |||| | Sbjct 63 GGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTAT 4 Query 1476 GG 1477 || Sbjct 3 GG 2 >seq1639 Length=110 Score = 89.7 bits (98), Expect = 2e-14 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 3167 CTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCC 3226 |||| |||||||||||||| ||||| ||| | || || ||||| ||| | |||||||| | Sbjct 110 CTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTC 51 Query 3227 CTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTT 3275 | |||||||||| | |||||||| |||| || || |||| || || Sbjct 50 CATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362645389544