Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq27 558 1e-155 seq80 372 1e-99 seq149 109 2e-20 seq483 107 7e-20 seq2469 100 1e-17 seq1639 98.7 4e-17 seq452 98.7 4e-17 seq906 96.9 1e-16 seq2279 78.8 4e-11 >seq27 Length=3337 Score = 558 bits (618), Expect = 1e-155 Identities = 832/1174 (71%), Gaps = 16/1174 (1%) Strand=Plus/Minus Query 3183 TCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCC 3242 ||||| ||| | || || ||||| ||| | ||||||||||| |||||||||| | || Sbjct 3336 TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCT 3277 Query 3243 ATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCATGTTTATGGTGAT 3302 ||||| |||| || ||| |||| ||||| ||| | || |||||||| ||||||||||| Sbjct 3276 ATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAA 3217 Query 3303 CAGTGGATTCAATTTATGCGTGATGGTGTTGATGCTTCGCCGCTTCCTTCCGTTACTACT 3362 ||||||||| | || ||| ||||||||| |||| | || || || | |||| ||| Sbjct 3216 CAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT 3157 Query 3363 ACTAAGTATCCGGATGATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATT 3422 ||| ||| || |||| | || | |||| || ||| ||| | | ||| || Sbjct 3156 ACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATC 3097 Query 3423 CCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGG 3482 |||||| |||| |||| |||| ||||||| ||||| |||||||| ||||||||| Sbjct 3096 CCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGG 3037 Query 3483 ATGCCTGAGCGTACTGAAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGG 3541 |||||||| ||||| || ||||| ||| | |||| ||| |||||| |||||||||| Sbjct 3036 ATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGG 2978 Query 3542 ATTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCT 3601 |||||||| |||||||| |||| |||||| ||||||| |||||||| || ||| |||| Sbjct 2977 TTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCT 2918 Query 3602 CGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTA 3661 || |||||| | | | || || ||||| ||||||||| |||| || ||||| Sbjct 2917 TTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTA 2858 Query 3662 TGCGCAGCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTAT 3721 ||| | | || ||||| || || ||| ||| || ||||||||||||| ||||||||| Sbjct 2857 TGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 2798 Query 3722 CTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCA 3781 || ||||| ||| |||||| ||||| || || ||||| || || ||||| |||| Sbjct 2797 TTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCG 2738 Query 3782 TACCGATTTTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACA 3841 | || | ||||| || || || || ||||| || || |||||| | || | || || Sbjct 2737 CTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCA 2678 Query 3842 GTTTTCGGGGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGA 3901 |||||| || || ||||||||||| | |||||| || |||||||| ||||| || ||||| Sbjct 2677 GTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGA 2618 Query 3902 GCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCA 3961 |||||| ||| | ||| | ||| ||||| || ||||||| || ||| Sbjct 2617 GCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGAT 2558 Query 3962 TCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTT 4021 ||| || ||| | | | ||||||||||||||| ||||||| ||||| | ||| Sbjct 2557 TCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTT 2498 Query 4022 GATTGGTAATTTGCCGCCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCC 4081 | ||| || |||||||||||||| |||||| |||| |||||||| |||| | Sbjct 2497 GTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTC 2438 Query 4082 GGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAA 4141 | | ||| ||||| |||| ||| | ||||||||| | || |||||| Sbjct 2437 GTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-T 2379 Query 4142 CTAC-AAGTATCAGTTACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTA 4200 || | ||||| | ||||| || ||||| ||| || | || ||| || Sbjct 2378 CTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTT 2328 Query 4201 GTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCC 4260 ||||||| | |||| || | || ||| ||| |||| ||| | ||||||| Sbjct 2327 CTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCC 2271 Query 4261 AGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCC 4320 |||| |||||| | |||||||||| ||||| | | |||||| | ||||||||| Sbjct 2270 AGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCA 2211 Query 4321 ATATTCCTACTGTTCGTGATTCTATTATGACCTC 4354 || | || || ||| ||||| || ||||| || Sbjct 2210 ATCTGCCGACCACTCGCGATTCAATCATGACTTC 2177 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 1383 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 1326 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 1325 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 1269 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 1268 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 1222 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 1221 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 1166 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 1165 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 1106 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 1105 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 1049 >seq80 Length=554 Score = 372 bits (412), Expect = 1e-99 Identities = 311/381 (82%), Gaps = 0/381 (0%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 478 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 419 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 418 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 359 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 358 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 299 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 298 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 239 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858 || |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||| Sbjct 238 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 179 Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918 |||| ||| ||||| | |||||| || || | | | ||| || ||||| || Sbjct 178 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 119 Query 2919 GCTCGTCAGAAATTACGCGCA 2939 | ||||| |||||||| ||| Sbjct 118 GTGCGTCAAAAATTACGTGCA 98 >seq149 Length=297 Score = 109 bits (120), Expect = 2e-20 Identities = 197/280 (70%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 1409 GCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCG 1468 || || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| Sbjct 275 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 216 Query 1469 GAGTTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTC 1526 |||| || | |||| | || |||||||||| || | ||||| | ||||||| | Sbjct 215 GAGTATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACAC 158 Query 1527 TTCCTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTA 1586 ||||| || || ||||||||| || ||||| | |||||| ||| |||||| ||| Sbjct 157 TTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTA 99 Query 1587 ACTCG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATC 1643 | | | || | | |||||| ||||| |||| | | || || || ||||| || Sbjct 98 AATAGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACA 41 Query 1644 AACATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGT 1683 || ||||||| ||| || |||||||| |||||||| Sbjct 40 CGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGT 1 >seq483 Length=183 Score = 107 bits (118), Expect = 7e-20 Identities = 132/174 (76%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 3101 TGACCTCTCTCATCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTC 3157 |||||| || ||||||| ||| ||| ||| | || ||||||||| | | || |||| Sbjct 172 TGACCTTTCCCATCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTC 116 Query 3158 ATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCT 3217 | ||||| ||||||||||||| ||||| ||| | || || ||||| ||| | ||||| Sbjct 115 AACTACTCCGGTTATCGCTGGCGCCTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCT 56 Query 3218 TTCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTT 3271 |||||| |||||||||| | || ||||| |||| || ||| |||| ||||| Sbjct 55 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTT 2 >seq2469 Length=164 Score = 100 bits (110), Expect = 1e-17 Identities = 119/155 (77%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 3101 TGACCTCTCTCATCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTC 3157 |||||| || ||||||| ||| ||| ||| | || ||||||||| | | || |||| Sbjct 153 TGACCTTTCCCATCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTC 97 Query 3158 ATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCT 3217 | ||||| |||||||||||||| ||||| ||| | || || ||||| ||| | ||||| Sbjct 96 AACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCT 37 Query 3218 TTCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTA 3252 |||||| |||||||||| | || ||||| |||| Sbjct 36 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA 2 >seq1639 Length=110 Score = 98.7 bits (108), Expect = 4e-17 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 3163 CTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTC 3222 |||| |||||||||||||| ||||| ||| | || || ||||| ||| | |||||||||| Sbjct 110 CTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTC 51 Query 3223 CTCTGCGTCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTT 3271 | |||||||||| | || ||||| |||| || ||| |||| ||||| Sbjct 50 CATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTT 2 >seq452 Length=183 Score = 98.7 bits (108), Expect = 4e-17 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 1295 TGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAATGAA 1354 ||||| | || |||||||| | || | || || ||||| || |||| || |||| Sbjct 183 TGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGAT 124 Query 1355 AACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCTGAA 1414 || ||||||||| | ||||| |||||| | || ||||||| ||||| || || Sbjct 123 AATCCCAATGCTTTGCGTGACTATTTTCGTGCTATTGGTCGTATGGTTCTTGCTGCCGAG 64 Query 1415 GGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAGTTT 1474 ||||| || ||| ||||| || ||||||||||| ||| |||||||||| |||| | Sbjct 63 GGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTAT 4 Query 1475 GG 1476 || Sbjct 3 GG 2 >seq906 Length=183 Score = 96.9 bits (106), Expect = 1e-16 Identities = 118/155 (76%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 3101 TGACCTCTCTCATCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTC 3157 |||||| || ||||||| ||| ||| ||| | || ||||||||| | | || |||| Sbjct 31 TGACCTTTCCCATCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTC 87 Query 3158 ATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCT 3217 | |||| |||||||||||||| ||||| ||| | || || ||||| ||| | ||||| Sbjct 88 AACTGCTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCT 147 Query 3218 TTCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTA 3252 |||||| |||||||||| | || ||||| |||| Sbjct 148 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA 182 >seq2279 Length=141 Score = 78.8 bits (86), Expect = 4e-11 Identities = 99/136 (73%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1341 AGGCATTCAATGAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTG 1400 |||| || |||| || ||||||||| | ||||| |||||| | | ||||||| | Sbjct 137 AGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGG 78 Query 1401 TTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTT 1460 |||| || || ||||| || ||| ||||| || ||||||||||| ||| ||| Sbjct 77 TTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTT 18 Query 1461 GTGTGCCGGAGTTTGG 1476 ||||||| |||| ||| Sbjct 17 GTGTGCCTGAGTATGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19369045206232