Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq27 522 1e-144 seq80 444 2e-121 seq149 111 6e-21 seq2491 87.8 7e-14 >seq27 Length=3337 Score = 522 bits (578), Expect = 1e-144 Identities = 819/1160 (71%), Gaps = 28/1160 (2%) Strand=Plus/Minus Query 3228 TTGGCGCTATTCGCCTTTCCCCGCTTCGTCGTGGCCTTGCTGTTGACTCTCGTGTTGACC 3287 |||||||| | || ||||| || | ||||||||||||||| |||||||| ||| ||| Sbjct 3317 TTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACA 3258 Query 3288 TGTTCACGTTTTATGTCCCTCATCGTCATGTATATGGTGAGCAGTGGATTGATTTTATGA 3347 | || || |||||||||||||||||||| || |||||||| ||||||||| | || |||| Sbjct 3257 TTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGA 3198 Query 3348 AGCAAGGTGTTGATGCTGCTCCTTTGGCCCCTGTTCAGTGCTCTCGCGGTTGGGATAGTG 3407 || | |||||| |||| ||||| | | ||||| | | || |||| ||| || Sbjct 3197 AGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAA---CACTACTGGTT---ATATTG 3144 Query 3408 CTCAG------TATCTTGCTACTATTCCGTCTAGTAACTTAAAGGTTCCTAAG--TTTCT 3459 || | ||||| || ||| || || | || | |||||| ||| | Sbjct 3143 ACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGT 3084 Query 3460 TCATCAAGGTTACCTGAACATTTACAATAATTACTTTAAAGCTCCGTGGATGGATGACCT 3519 | ||| ||||| |||| || || || || || |||||||| ||||||||| ||||| Sbjct 3083 T--TCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCG 3026 Query 3520 GACTTATGCCAACCCGTCTAATATGGAGGGTGAAGATGTTCGTTTTGGTGTTCGTGCATG 3579 || | || ||||| | | | | || |||| ||||| |||| | ||| || Sbjct 3025 TACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTG 2966 Query 3580 TAACTTGAAAACTATTTGGACTGCTCCGCTTCCTCCGGATACTGAAACCTCTCATTCTAT 3639 | | |||| ||||||||||||||||||||||| || ||||| |||| || Sbjct 2965 CCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAAT 2906 Query 3640 GGAGACTGAAACCAACTCCATTGACATTATGGGTTTGCAGGCCGCTTATGCTCAATTACA 3699 | |||| |||| || ||||||||||||||| |||| || ||||||||| | || || Sbjct 2905 GACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCA 2846 Query 3700 TACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTGTTAACGAATTTGG 3759 |||||| || || ||||||||||||||| ||||| | |||| || || |||||| Sbjct 2845 TACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGG 2786 Query 3760 AGGTAGTACTTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGCATTCTGAGTTCTG 3819 ||||| || |||||||| || || || |||||||| ||||| |||| ||| | |||| Sbjct 2785 AGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTG 2726 Query 3820 GGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTCAGTTCTCCGGTCG 3879 ||| || |||||||||||||| || || ||||||| || | || ||||| || ||||| Sbjct 2725 GGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCG 2666 Query 3880 TGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTGAGCATGGCACTAT 3939 ||| || ||||| | ||| ||||| || ||||| ||||| ||||||||||||||||| Sbjct 2665 TGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTAT 2606 Query 3940 GTTCACACTCGCATTGGTCCGCTTCCCGCCGACTC--ATGAAATGGAGATGCATTACTTA 3997 ||| || || || | || || || ||||| ||| | ||| ||||| || ||| | Sbjct 2605 GTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTT 2548 Query 3998 GTTGGTAAAGAAGATTTGACTTATACTGATTTGGCTTGTGACCCTGCTTTG-ATGGCTAA 4056 | ||||| | |||||||||||| ||| | ||| | ||||||| |||| ||||| || Sbjct 2547 AACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AA 2489 Query 4057 CTTGCCTCCTCGTGAGGTTAATATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGTGCTAA 4116 |||||| || ||||| || |||| | | |||| |||||| | | | || Sbjct 2488 CTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAA 2429 Query 4117 GTTTAAGATCGCTGAAGGTCAGTGGTATCG-CATGCAGCCTGATCG--CGTTGCATTGCC 4173 ||||||||| ||||| |||||||||||||| |||| |||| ||| ||| | | Sbjct 2428 GTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGC-GCCT--TCGTATGTTTCTCCTGC 2372 Query 4174 GTATAACTATCTTGATGGTTTTCCGTTCTATAGCGCGATTCCGTCTGATGATATTAAGCA 4233 ||| || |||||| || || || ||| | | || |||| |||| | | | Sbjct 2371 TTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGA 2312 Query 4234 GCGCGTTCTGGTTAATACTGATAACTACGATGAGGTTTTCCAGTCTATGCAGCTTGCGCA 4293 ||||| || || || | || || || ||||||||| | ||| | ||| Sbjct 2311 ACGCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCA 2252 Query 4294 CTGGAATATGCAGACTAAGTTTAATTGCACCATTTATCGTAATATGCCGACCACTCGCGA 4353 ||||||| ||| ||| |||||| ||| ||||||| ||| |||||||||||||||| Sbjct 2251 GTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGA 2192 Query 4354 CTCTATTATGACCTCTTGAT 4373 || || ||||| || |||| Sbjct 2191 TTCAATCATGACTTCGTGAT 2172 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Minus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 1189 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 1130 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 1129 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 1073 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 1072 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 1013 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 1012 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 953 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 952 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 893 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 892 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 836 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 835 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 792 >seq80 Length=554 Score = 444 bits (492), Expect = 2e-121 Identities = 340/400 (85%), Gaps = 2/400 (1%) Strand=Plus/Minus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 480 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 421 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 420 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 361 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 301 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 300 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 241 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 240 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 181 Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939 |||||| ||||||||||| || ||| || || || |||| ||| ||||| Sbjct 180 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 122 Query 2940 AATGCTCGTCAGAAACTTCGTGCAAGTGGAGTAATGTAAT 2979 || | ||||| ||| | |||||| ||||| ||||||| Sbjct 121 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 82 >seq149 Length=297 Score = 111 bits (122), Expect = 6e-21 Identities = 194/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1410 GCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCG 1469 || || ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| Sbjct 275 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 216 Query 1470 GAGTTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTC 1527 |||| ||| |||| | || |||||||||| |||| ||||| | ||||||| | Sbjct 215 GAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACAC 158 Query 1528 TTCCTTTGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTA 1587 ||||| || || ||||||||||| ||||| |||||| ||| |||||| ||| Sbjct 157 TTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTA 99 Query 1588 ACTCG-TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAA 1646 | | | || | | |||||||||||| | || || || || || ||||| Sbjct 98 AATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACG 39 Query 1647 CATGATGCTTATTCTCGCAAAGGTTGGTTGTGGCCTGT 1684 || || |||| ||| || ||||||||||||||||| Sbjct 38 CAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGT 1 >seq2491 Length=168 Score = 87.8 bits (96), Expect = 7e-14 Identities = 111/151 (74%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 3022 CGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCCCT---ATAA 3078 ||||| ||||||||||| ||| ||||||||||| ||||||||||||||| | | Sbjct 168 CGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGA 109 Query 3079 GGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGACCTTTCTCA 3138 |||| | ||||| || | |||||| ||| || ||||| || || |||||||| || Sbjct 108 GGATAAAT-TATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA 50 Query 3139 TCTGGTTTTTGATGCAGGCAAAATTGGTCGT 3169 ||| | || ||| || | ||||||||| Sbjct 49 TCTTGGCTTCCTTGCTGGTCAGATTGGTCGT 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19301847131008