Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq27 565 1e-157 seq80 370 4e-99 seq483 122 3e-24 seq2469 120 1e-23 seq149 120 1e-23 seq906 114 5e-22 seq452 107 7e-20 seq1639 102 3e-18 seq2279 84.2 8e-13 >seq27 Length=3337 Score = 565 bits (626), Expect = 1e-157 Identities = 838/1182 (71%), Gaps = 22/1182 (2%) Strand=Plus/Minus Query 3186 TCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTGCGTCGTGGTTTAGCT 3245 ||||| ||| | || || ||||||||| | ||||||||||| |||||||||| | ||| Sbjct 3336 TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCT 3277 Query 3246 ATTGACTCTAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGCCATGTTTATGGTGAC 3305 |||||||||| || || |||| ||||| ||| | || ||||| || ||||||||||| Sbjct 3276 ATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAA 3217 Query 3306 CAGTGGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTCCCTTCCGTTACTACT 3365 ||||||||| | || ||| ||||||||| ||||| | || ||||| | |||| ||| Sbjct 3216 CAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACT 3157 Query 3366 ACTCAGTATCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATT 3425 ||| ||| || | || | || | |||| || ||| ||| | | ||| || Sbjct 3156 ACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATC 3097 Query 3426 CCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGG 3485 |||||| |||| |||| |||| ||||||| ||||| |||||||| ||||||||| Sbjct 3096 CCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGG 3037 Query 3486 ATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCGCTA 3541 |||||||| ||||| || ||||| ||| ||| ||| | | |||||| |||| || Sbjct 3036 ATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCGTTA 2981 Query 3542 TGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAA 3601 ||| ||||||||||||||||| |||| |||||| ||||||| |||||||| || ||| | Sbjct 2980 TGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGA 2921 Query 3602 GCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGC 3661 ||| || |||||| | | | || || ||||| ||||||||| |||| || || Sbjct 2920 GCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGC 2861 Query 3662 TTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGATGT 3721 |||||| | | |||||||| || || ||| ||| |||||||||||||| | |||||| Sbjct 2860 TTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGT 2801 Query 3722 TATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTAT 3781 ||| || ||||| ||| |||||| ||||| || || ||||| || || ||||| || Sbjct 2800 TATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCAT 2741 Query 3782 GCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTCGG 3841 || | | || ||||||| || || || || ||||| || || |||||| | || | || Sbjct 2740 GCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGG 2681 Query 3842 ACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGTGCC 3901 |||||||| ||||| || |||||||| | |||||| || ||||| || ||||| || || Sbjct 2680 CCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCC 2621 Query 3902 GGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGA 3961 |||||||| ||| | ||| | ||| ||||| || ||||||| || || Sbjct 2620 TGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGA 2561 Query 3962 GCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCCGGC 4021 | ||| || ||| | | | ||||||||||||||| |||| || ||||| | Sbjct 2560 GATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGT 2501 Query 4022 TTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGGTCG 4081 |||| ||| || |||||||| ||||| |||||| ||||| |||||||| |||| Sbjct 2500 TTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGA 2441 Query 4082 TCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGT 4141 | || | ||| ||||| |||| ||| | ||||||||| | || ||||| Sbjct 2440 TTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGT 2381 Query 4142 TAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTACGA 4200 | || | ||||| | |||||||| || || ||| || | || ||| Sbjct 2380 T-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC--------- 2331 Query 4201 CTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTT 4260 || ||||||| | |||| || | || ||| ||| |||| ||| | |||| Sbjct 2330 CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTT 2274 Query 4261 TCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTTATC 4320 ||||||| |||||| | |||||||||| ||||| | | |||||| | ||||||| Sbjct 2273 TCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATC 2214 Query 4321 GTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 | || | || || ||| ||||| || ||||| || |||| Sbjct 2213 GCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 2172 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 1188 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 1129 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 1128 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 1074 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 1073 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 1015 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 1014 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 956 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 955 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 896 Query 5762 CGTCCAT 5768 |||| || Sbjct 895 CGTCTAT 889 >seq80 Length=554 Score = 370 bits (410), Expect = 4e-99 Identities = 318/393 (81%), Gaps = 0/393 (0%) Strand=Plus/Minus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 480 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 421 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 420 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 361 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 360 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 301 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 300 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 241 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 240 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 181 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 180 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 121 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA 2949 | | ||||| |||||||| ||| | ||| ||| Sbjct 120 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGA 88 >seq483 Length=183 Score = 122 bits (134), Expect = 3e-24 Identities = 133/173 (77%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 3104 TGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCA 3161 ||||||||| ||||||| ||| | ||| | || |||||||||| | | || ||||| Sbjct 172 TGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 115 Query 3162 TGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTT 3221 ||||| ||||| ||||||| ||||| ||| | || || ||||||||| | |||||| Sbjct 114 ACTACTCCGGTTATCGCTGGCGCCTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 55 Query 3222 TCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTT 3274 ||||| |||||||||| | ||||||||||||| || || |||| ||||| Sbjct 54 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTT 2 >seq2469 Length=164 Score = 120 bits (132), Expect = 1e-23 Identities = 121/154 (79%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 3104 TGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCA 3161 ||||||||| ||||||| ||| | ||| | || |||||||||| | | || ||||| Sbjct 153 TGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 96 Query 3162 TGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTT 3221 ||||| ||||| |||||||| ||||| ||| | || || ||||||||| | |||||| Sbjct 95 ACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 36 Query 3222 TCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTA 3255 ||||| |||||||||| | ||||||||||||| Sbjct 35 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA 2 >seq149 Length=297 Score = 120 bits (132), Expect = 1e-23 Identities = 196/278 (71%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 1409 GCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCG 1468 || || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| Sbjct 275 GCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCT 216 Query 1469 GAGTTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTC 1526 |||| ||| |||| | ||||||||||||| || | ||||| | ||||||| | Sbjct 215 GAGTATGGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACAC 158 Query 1527 TTCCTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTA 1586 ||||| || || ||||||||||| ||||| |||||| ||| |||||| ||| Sbjct 157 TTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTA 99 Query 1587 ACTCG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAA 1645 | | | || | | |||||| ||||| | || || || || |||||||| Sbjct 98 AATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACG 39 Query 1646 CATGACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGT 1683 || ||||||| ||| ||| |||||| |||||||||| Sbjct 38 CAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGT 1 >seq906 Length=183 Score = 114 bits (126), Expect = 5e-22 Identities = 120/154 (78%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 3104 TGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCA 3161 ||||||||| ||||||| ||| | ||| | || |||||||||| | | || ||||| Sbjct 31 TGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 88 Query 3162 TGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTT 3221 |||| ||||| |||||||| ||||| ||| | || || ||||||||| | |||||| Sbjct 89 ACTGCTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 148 Query 3222 TCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTA 3255 ||||| |||||||||| | ||||||||||||| Sbjct 149 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA 182 >seq452 Length=183 Score = 107 bits (118), Expect = 7e-20 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 1295 TGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAATGAA 1354 ||||| | || ||||| || || || | ||||| ||||| || |||| ||| |||| Sbjct 183 TGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGAT 124 Query 1355 AACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCTGAA 1414 || ||||||||| | ||||| |||||| | || ||||||| ||||| || || Sbjct 123 AATCCCAATGCTTTGCGTGACTATTTTCGTGCTATTGGTCGTATGGTTCTTGCTGCCGAG 64 Query 1415 GGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAGTTT 1474 ||||| || ||| ||||| || ||||||||||| ||| |||||||||| |||| | Sbjct 63 GGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTAT 4 Query 1475 GG 1476 || Sbjct 3 GG 2 >seq1639 Length=110 Score = 102 bits (112), Expect = 3e-18 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 3166 CTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTC 3225 |||| ||||| |||||||| ||||| ||| | || || ||||||||| | |||||||||| Sbjct 110 CTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTC 51 Query 3226 CTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTT 3274 | |||||||||| | ||||||||||||| || || |||| ||||| Sbjct 50 CATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTT 2 >seq2279 Length=141 Score = 84.2 bits (92), Expect = 8e-13 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1341 AGGCTTTTAATGAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTG 1400 |||| ||| |||| || ||||||||| | ||||| |||||| | | ||||||| | Sbjct 137 AGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGG 78 Query 1401 TTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTT 1460 |||| || || ||||| || ||| ||||| || ||||||||||| ||| ||| Sbjct 77 TTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTT 18 Query 1461 GTGTGCCGGAGTTTGG 1476 ||||||| |||| ||| Sbjct 17 GTGTGCCTGAGTATGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19385044747952