Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F000825725.1_202014-12-08] 1,554 sequences; 49,238,270 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq1328 529 7e-147 >seq1328 Length=5385 Score = 529 bits (586), Expect = 7e-147 Identities = 629/850 (74%), Gaps = 51/850 (6%) Strand=Plus/Minus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 850 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 791 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 790 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 731 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 730 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 671 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 670 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 611 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 610 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 551 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 550 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 491 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT- 2970 | | ||||| |||||||| ||| | ||| ||| |||| | | ||| ||| |||| Sbjct 490 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTT 432 Query 2971 ----CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTG 2995 || || ||| ||||| |||||||| | Sbjct 431 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 372 Query 2996 CCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGC--TCTTT 3053 | || |||||||||||||| ||| || |||||||| | |||||| | | || Sbjct 371 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 312 Query 3054 AAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTC 3112 |||| ||||| ||||||||| | |||||| ||| || ||| ||||||||| Sbjct 311 GAGGATAAATT--ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC 254 Query 3113 TCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCT 3170 ||||||| ||| | ||| | || |||||||||| | | || ||||| ||||| Sbjct 253 CCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCG 196 Query 3171 GTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTG 3230 ||||| |||||||| ||||| ||| | || || ||||||||| | ||||||||||| || Sbjct 195 GTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTG 136 Query 3231 CGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGC 3290 |||||||| | ||||||||||||| || || |||| ||||| ||| | || ||||| Sbjct 135 CGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGT 76 Query 3291 CATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTC 3350 || ||||||||||| ||||||||| | || ||| ||||||||| ||||| | || ||| Sbjct 75 CACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTC 16 Query 3351 CCTTCCGTTA 3360 || | |||| Sbjct 15 CCGACTGTTA 6 Score = 430 bits (476), Expect = 5e-117 Identities = 666/945 (70%), Gaps = 22/945 (2%) Strand=Plus/Minus Query 3423 ATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCG 3482 || |||||| |||| |||| |||| ||||||| ||||| |||||||| |||||| Sbjct 5329 ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCG 5270 Query 3483 TGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCGTGATGATTCTCG 3538 ||||||||||| ||||| || ||||| ||| ||| ||| | | |||||| |||| Sbjct 5269 TGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCAAGATGATGCTCG 5214 Query 3539 CTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAAC 3598 ||||| ||||||||||||||||| |||| |||||| ||||||| |||||||| || || Sbjct 5213 TTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGAC 5154 Query 3599 TAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGC 3658 | |||| || |||||| | | | || || ||||| ||||||||| |||| || Sbjct 5153 TGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGC 5094 Query 3659 CGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGA 3718 |||||||| | | |||||||| || || ||| ||| |||||||||||||| | ||| Sbjct 5093 TGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA 5034 Query 3719 TGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGT 3778 |||||| || ||||| ||| |||||| ||||| || || ||||| || || ||||| Sbjct 5033 TGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGT 4974 Query 3779 TATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCT 3838 |||| | | || ||||||| || || || || ||||| || || |||||| | || | Sbjct 4973 CATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTT 4914 Query 3839 CGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGT 3898 || |||||||| ||||| || |||||||| | |||||| || ||||| || ||||| || Sbjct 4913 AGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGT 4854 Query 3899 GCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTT 3958 || |||||||| ||| | ||| | ||| ||||| || ||||||| || Sbjct 4853 TCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAA 4794 Query 3959 GGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCTTGCGGGTGACCC 4018 ||| ||| || ||| | | | ||||||||||||||| |||| || ||||| Sbjct 4793 AGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCC 4734 Query 4019 GGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCTTTTCCGTGATGG 4078 | |||| ||| || |||||||| ||||| |||||| ||||| |||||||| ||| Sbjct 4733 TGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGG 4674 Query 4079 TCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTA 4138 | | || | ||| ||||| |||| ||| | ||||||||| | || || Sbjct 4673 TGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTA 4614 Query 4139 TGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATGATGCGCCCGGTA 4197 |||| || | ||||| | |||||||| || || ||| || | || ||| Sbjct 4613 TGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGGAACCGC------ 4561 Query 4198 CGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATGACTATAATGCCT 4257 || ||||||| | |||| || | || ||| ||| |||| ||| | | Sbjct 4560 ---CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATGATTATGACCAGT 4507 Query 4258 GTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATAATGTCAATGTTT 4317 |||||||||| |||||| | |||||||||| ||||| | | |||||| | |||| Sbjct 4506 GTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT 4447 Query 4318 ATCGTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 |||| || | || || ||| ||||| || ||||| || |||| Sbjct 4446 ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 4402 Score = 178 bits (196), Expect = 5e-41 Identities = 281/398 (71%), Gaps = 6/398 (2%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTATTTGATACACTGACCCTTGCTGATGACCGTTTGCAGGCTTTTAAT 1351 || ||||| | || ||||| || || || | ||||| ||||| || |||| ||| || Sbjct 2124 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2065 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 2064 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2005 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGTTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 2004 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1945 Query 1472 TTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | ||||||||||||| || | ||||| | ||||||| |||| Sbjct 1944 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1887 Query 1530 CTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||||| ||||| |||||| ||| |||||| |||| | Sbjct 1886 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1828 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACAT 1648 | || | | |||||| ||||| | || || || || |||||||| || Sbjct 1827 AGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAG 1768 Query 1649 GACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 ||||||| ||| ||| |||||| ||||||||||||| Sbjct 1767 GACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1730 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 3418 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 3359 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 3358 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 3304 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 3303 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 3245 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 3244 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 3186 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 3185 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 3126 Query 5762 CGTCCAT 5768 |||| || Sbjct 3125 CGTCTAT 3119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19385261091248