Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizopus_20microsporus_20[genbank_20GCA_5F900000135.1_202014-11-26] 1,386 sequences; 49,591,775 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq699 524 3e-145 >seq699 Length=5385 Score = 524 bits (580), Expect = 3e-145 Identities = 615/828 (74%), Gaps = 54/828 (7%) Strand=Plus/Minus Query 2559 CAGGCTAGTTCTGTTCTGGATATCACCGAGGAAGATTTTGACTTCCTGACTGGTGATAAG 2618 |||||| | | ||| ||||| | ||||| || ||||| || || ||||| || | || Sbjct 848 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 789 Query 2619 ATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTAGAGGCTTGTGTTTATGGA 2678 |||||||||||||||||||| ||||| |||||||| || |||||||| |||||||| Sbjct 788 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 729 Query 2679 ACGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2738 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct 728 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 669 Query 2739 ATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCGCG 2798 |||||||||||||||||||||||||||||||| || || || ||| | ||||||||||| Sbjct 668 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 609 Query 2799 GAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2858 || |||| |||||||||||||||||||||||||| |||||||| |||||||| | ||| Sbjct 608 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 549 Query 2859 GCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAAGAGAAT 2918 |||| ||| ||||| | |||||| || || | | | ||| || ||||| || Sbjct 548 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 489 Query 2919 GCTCGTCAGAAATTACGCGCAAATGG---GTTGAAATG---ATATGAAAAAAGCACGT-- 2970 | ||||| |||||||| ||| | || | || |||| | | | ||||| |||| Sbjct 488 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAA--ACGTTC 431 Query 2971 ---CGTTC-TCCTAGTCGT------------------------------CGTAAAGGTGC 2996 || || ||| ||||| |||||||| || Sbjct 430 TGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGC 371 Query 2997 TCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATT-ATGGGCCTTCGGGCCC---CTTA 3052 ||| || ||||||||||| ||| || |||||||| ||| |||||| ||| ||| Sbjct 370 TCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTG 311 Query 3053 AGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTTGACCTCTCTCA 3112 ||||| | | ||||||||| | |||||| || || ||| |||||| || || Sbjct 310 AGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA 251 Query 3113 TCTT-GCTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCATGGACTCCTGT 3169 |||| |||| ||| ||| | || ||||||||| | | || ||||| ||||| || Sbjct 250 TCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 194 Query 3170 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCTCCTCTGCG 3229 |||||||||||| ||||| ||| | || || ||||| ||| | ||||||||||| |||| Sbjct 193 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 134 Query 3230 TCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATTCCGCATCGTCA 3289 |||||| | || ||||| |||| || ||| |||| ||||| ||| | || |||||||| Sbjct 133 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 74 Query 3290 TGTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGC 3337 ||||||||||| ||||||||| | || ||| ||||||||| |||| Sbjct 73 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGC 26 Score = 435 bits (482), Expect = 1e-118 Identities = 687/978 (70%), Gaps = 16/978 (2%) Strand=Plus/Minus Query 3379 ATGCTGGTTATGTTGGTACTATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATC 3438 |||| | || | |||| || ||| ||| | | ||| || |||||| |||| || Sbjct 5370 ATGCCGCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTC 5311 Query 3439 AGTCTTATCTGAATATTTATAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTG 3498 || |||| ||||||| ||||| |||||||| ||||||||||||||||| ||||| | Sbjct 5310 AGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCG 5251 Query 3499 AAGCTAATCCTTCAAA-CTTAGATCGTGATGATTCTCGTTATGGATTCCGTTGTTGCCAT 3557 | ||||| ||| | |||| ||| |||||| |||||||||| |||||||| |||||| Sbjct 5250 AGGCTAACCCTAATGAGCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCAT 5192 Query 3558 CTTAAAACTATTTGGTCTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGC 3617 || |||| |||||| ||||||| |||||||| || ||| |||| || |||||| Sbjct 5191 CTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACG 5132 Query 3618 ATTGAAAGCAATTCCATTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCACACT 3677 | | | || || ||||| ||||||||| |||| || |||||||| | | || ||| Sbjct 5131 ACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACT 5072 Query 3678 GAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGT 3737 || || || ||| ||| || ||||||||||||| ||||||||| || ||||| ||| Sbjct 5071 GACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGT 5012 Query 3738 TCAACCTCCTATGATGCCGATAACCGACCGTTGCTTGTTATGCATACCGATTTTTGGGCT 3797 |||||| ||||| || || ||||| || || ||||| |||| | || | ||||| Sbjct 5011 AAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCA 4952 Query 3798 TCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCGAGTT 3857 || || || || ||||| || || |||||| | || | || |||||||| || || ||| Sbjct 4951 TCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTT 4892 Query 3858 CAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATG 3917 |||||||| | |||||| || |||||||| ||||| || ||||||||||| ||| | Sbjct 4891 CAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTT 4832 Query 3918 ACTTTGATGCTGGTTCGCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGT 3977 ||| | ||| ||||| || ||||||| || ||| ||| || ||| | | Sbjct 4831 ACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCT 4772 Query 3978 CGTAATAATTTGACTTATACCGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTTGCCG 4037 | ||||||||||||||| ||||||| ||||| | |||| ||| || |||||| Sbjct 4771 AAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCG 4712 Query 4038 CCGCGTGAGATTTCTTATCAGGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGATTAAG 4097 |||||||| |||||| |||| |||||||| |||| || | ||| ||||| Sbjct 4711 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAG 4652 Query 4098 GTTGCCGAGTCTATCTGGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTT 4156 |||| ||| | ||||||||| | || |||||| || | ||||| | Sbjct 4651 ATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCT 4593 Query 4157 ACTTGAGGGTTTCCCGTTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCA 4216 ||||| || ||||| ||| || | || ||| || ||||||| | | Sbjct 4592 TCTTGAAGGCTTCCCATTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AA 4544 Query 4217 GAAGGCTATTCTCATTGACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCT 4276 ||| || | || ||| ||| |||| ||| | ||||||||||| |||||| | Sbjct 4543 GAACGC-GTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTT 4485 Query 4277 TCAGTGGAATAATCAGGCTCGTTATAATGTTAATGTTTATCGCCATATTCCTACTGTTCG 4336 |||||||||| ||||| | | |||||| | ||||||||| || | || || ||| Sbjct 4484 GCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCG 4425 Query 4337 TGATTCTATTATGACCTC 4354 ||||| || ||||| || Sbjct 4424 CGATTCAATCATGACTTC 4407 Score = 158 bits (174), Expect = 5e-35 Identities = 280/400 (70%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 1292 GGCTGGTTCTTTGTGTTTGACACGTTGACCCTTGCCGATGACCGTTTGCAGGCATTCAAT 1351 || ||||| | || |||||||| | || | || || ||||| || |||| || || Sbjct 2124 GGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTAT 2065 Query 1352 GAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGGTCGAGCTGTTCTGCGCGCT 1411 || || ||||||||| | ||||| |||||| | | ||||||| ||||| || Sbjct 2064 GATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC 2005 Query 1412 GAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAG 1471 || ||||| || ||| ||||| || ||||||||||| ||| |||||||||| ||| Sbjct 2004 GAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAG 1945 Query 1472 TTTGGAGGTCAGC--ACGGTCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTC 1529 | || | |||| | || |||||||||| || | ||||| | ||||||| |||| Sbjct 1944 TATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTC 1887 Query 1530 CTTTGGGAAGTCATGACCCTAACTTCGGTCGCCCGGTACGTAATTATCGCCAGATTAACT 1589 || || || ||||||||| || ||||| | |||||| ||| |||||| |||| | Sbjct 1886 CTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAAT 1828 Query 1590 CG-TTCCGTGGCATGTGGCCCTATGGCTTTAC-GCA-ACCGATAGCCGTTCGTTATCAAC 1646 | || | | |||||| ||||| |||| | | || || || ||||| || | Sbjct 1827 AGCTTGCAAAATACGTGGCCTTATGG--TTACAGTATGCCCATCGCAGTTCGCTACACGC 1770 Query 1647 ATGACGCTTATTCTCGCAAAGGTTGGTTATGGCCTGTTGA 1686 | ||||||| ||| || |||||||| ||||||||||| Sbjct 1769 AGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1730 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/360 (67%), Gaps = 32/360 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||||||||| ||| | | ||| Sbjct 3613 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAG--GCC 3556 Query 5312 --CGCTTCTAATACTTCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGGT 5369 | || | | |||||||| ||||||| | |||||||| | || | | || ||| Sbjct 3555 GTCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGGT 3499 Query 5370 AGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTATT 5429 | | |||| | ||| || ||| | | | ||||||||| | ||| || Sbjct 3498 A---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATTT 3452 Query 5430 GATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTACT 5487 | ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 3451 G----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATC 3396 Query 5488 TGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACTG 5547 | || || || || |||||||| || | |||||||||||||| |||| ||||||| ||| Sbjct 3395 TTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTG 3336 Query 5548 CCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTGG 5604 | || | | || | | ||||| ||||||||| | |||||||||||||| Sbjct 3335 CTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTGG 3279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19369297979512