Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24]
23,925 sequences; 541,692,442 total letters
Query= NC_012685.1
Length=5759
Score E
Sequences producing significant alignments: (Bits) Value
seq1409 86.0 2e-13
seq802 86.0 2e-13
seq20 82.4 3e-12
seq1008 78.8 3e-11
>seq1409
Length=15286
Score = 86.0 bits (94), Expect = 2e-13
Identities = 176/260 (68%), Gaps = 4/260 (2%)
Strand=Plus/Minus
Query 2238 CAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATGTACTT 2297
||||| || |||| ||||| || | | |||||| |||||||||| |||||||
Sbjct 9410 CAATTCGACAATAATACAGAAAATGTCTATTACTTTTTAATAGATTTAATAAATGTACTC 9351
Query 2298 GATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGC--CACCTAGTTCAGGCA 2355
|||||||| || || ||| ||| | || || || ||| || |||||| | |||| |
Sbjct 9350 GATAAACGTGTACCTAAATGTAATACGTTGGC--TATTTTAGCTCCACCTAATGCAGGTA 9293
Query 2356 AAAATTTTTTCTTTGACATGATTATGGCAATTTGTTTAAACTATGGACAATTAGGACAAG 2415
|||||||||| |||||| | | ||| |||||| || || || || |
Sbjct 9292 AAAATTTTTTTTTTGACGCTGTAGCTTCGTTTTTTTTAAATTACGGGTGTTTGGGTACTG 9233
Query 2416 CAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGATTATTACTTTGGA 2475
| || | | ||| || || ||| ||||| | ||| | | |||||||||
Sbjct 9232 CTAATAAAACGAATAATTTCGCGTTTATGGAAGCAGCAGGCAAACGCCTCGTACTTTGGA 9173
Query 2476 ATGAACCAAACTATGAAAGC 2495
||||||||||||||||||||
Sbjct 9172 ATGAACCAAACTATGAAAGC 9153
>seq802
Length=76345
Score = 86.0 bits (94), Expect = 2e-13
Identities = 176/260 (68%), Gaps = 4/260 (2%)
Strand=Plus/Plus
Query 2238 CAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATGTACTT 2297
||||| || |||| ||||| || | | |||||| |||||||||| |||||||
Sbjct 21063 CAATTCGACAATAATACAGAAAATGTCTATTACTTTTTAATAGATTTAATAAATGTACTC 21122
Query 2298 GATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGC--CACCTAGTTCAGGCA 2355
|||||||| || || ||| ||| | || || || ||| || |||||| | |||| |
Sbjct 21123 GATAAACGTGTACCTAAATGTAATACGTTGGC--TATTTTAGCTCCACCTAATGCAGGTA 21180
Query 2356 AAAATTTTTTCTTTGACATGATTATGGCAATTTGTTTAAACTATGGACAATTAGGACAAG 2415
|||||||||| |||||| | | ||| |||||| || || || || |
Sbjct 21181 AAAATTTTTTTTTTGACGCTGTAGCTTCGTTTTTTTTAAATTACGGGTGTTTGGGTACTG 21240
Query 2416 CAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGATTATTACTTTGGA 2475
| || | | ||| || || ||| ||||| | ||| | | |||||||||
Sbjct 21241 CTAATAAAACGAATAATTTCGCGTTTATGGAAGCAGCAGGCAAACGCCTCGTACTTTGGA 21300
Query 2476 ATGAACCAAACTATGAAAGC 2495
||||||||||||||||||||
Sbjct 21301 ATGAACCAAACTATGAAAGC 21320
>seq20
Length=1368841
Score = 82.4 bits (90), Expect = 3e-12
Identities = 174/257 (68%), Gaps = 2/257 (1%)
Strand=Plus/Minus
Query 2237 TCAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATGTACT 2296
||||||||| |||| |||||| | | | |||||| ||||||||| | || |
Sbjct 1060957 TCAATTTGATAATAATACCGAAAATGTTTATTATTTTTTAACAGATTTAATAAACATAAT 1060898
Query 2297 TGATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGCCACCTAGTTCAGGCAA 2356
||||||| | | || ||| ||| | || ||| || | | ||||||| | | || ||
Sbjct 1060897 TGATAAAATAATACCTAAATGTAATACATTAGCAATACTAGCTCCACCTAATGCTGGTAA 1060838
Query 2357 AAATTTTTTCTTTGACATGATTATGGCAATTTGTTTAAACTATGGACAATTAGG-ACAAG 2415
||||| ||| |||||| | || | ||| | |||| ||||| ||||| ||
Sbjct 1060837 AAATTATTTTTTTGACGCGGTTGCTTCTTTTTTTATAAATTATGGGGTGTTAGGTACTGC 1060778
Query 2416 CAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGATTATTACTTTGGA 2475
||| | ||| ||| ||||| ||| ||||| | |||| | ||| || | ||||
Sbjct 1060777 CAATAAAACA-AATAACTTTGCGTTTATGGAAGCGGCAGGTAAACGTTTAGTATTGTGGA 1060719
Query 2476 ATGAACCAAACTATGAA 2492
|||||||||| ||||||
Sbjct 1060718 ATGAACCAAATTATGAA 1060702
>seq1008
Length=50610
Score = 78.8 bits (86), Expect = 3e-11
Identities = 100/138 (72%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 2234 ATTTCAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATGT 2293
|| ||||||||| |||| |||||| || | | |||||| ||||||||| || |
Sbjct 17493 ATATCAATTTGATAATAATACCGAAAATATATATTATTTTTTAACAGATTTAATAAATAT 17434
Query 2294 ACTTGATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGCCACCTAGTTCAGG 2353
| | |||||| || |||| ||| ||| | || ||| || | | ||||||| | ||||
Sbjct 17433 AATAGATAAAAGAATTCCTAAATGTAATACATTAGCAATATTAGCTCCACCTAATGCAGG 17374
Query 2354 CAAAAATTTTTTCTTTGA 2371
|||||||| | | |||||
Sbjct 17373 CAAAAATTATATTTTTGA 17356
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 18312006865500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |