Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acyrthosiphon_20pisum_20[refseq_20GCF_5F000142985.2_202010-06-24] 23,925 sequences; 541,692,442 total letters Query= NC_012685.1 Length=5759 Score E Sequences producing significant alignments: (Bits) Value seq1409 86.0 2e-13 seq802 86.0 2e-13 seq20 82.4 3e-12 seq1008 78.8 3e-11 >seq1409 Length=15286 Score = 86.0 bits (94), Expect = 2e-13 Identities = 176/260 (68%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 2238 CAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATGTACTT 2297 ||||| || |||| ||||| || | | |||||| |||||||||| ||||||| Sbjct 9410 CAATTCGACAATAATACAGAAAATGTCTATTACTTTTTAATAGATTTAATAAATGTACTC 9351 Query 2298 GATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGC--CACCTAGTTCAGGCA 2355 |||||||| || || ||| ||| | || || || ||| || |||||| | |||| | Sbjct 9350 GATAAACGTGTACCTAAATGTAATACGTTGGC--TATTTTAGCTCCACCTAATGCAGGTA 9293 Query 2356 AAAATTTTTTCTTTGACATGATTATGGCAATTTGTTTAAACTATGGACAATTAGGACAAG 2415 |||||||||| |||||| | | ||| |||||| || || || || | Sbjct 9292 AAAATTTTTTTTTTGACGCTGTAGCTTCGTTTTTTTTAAATTACGGGTGTTTGGGTACTG 9233 Query 2416 CAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGATTATTACTTTGGA 2475 | || | | ||| || || ||| ||||| | ||| | | ||||||||| Sbjct 9232 CTAATAAAACGAATAATTTCGCGTTTATGGAAGCAGCAGGCAAACGCCTCGTACTTTGGA 9173 Query 2476 ATGAACCAAACTATGAAAGC 2495 |||||||||||||||||||| Sbjct 9172 ATGAACCAAACTATGAAAGC 9153 >seq802 Length=76345 Score = 86.0 bits (94), Expect = 2e-13 Identities = 176/260 (68%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 2238 CAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATGTACTT 2297 ||||| || |||| ||||| || | | |||||| |||||||||| ||||||| Sbjct 21063 CAATTCGACAATAATACAGAAAATGTCTATTACTTTTTAATAGATTTAATAAATGTACTC 21122 Query 2298 GATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGC--CACCTAGTTCAGGCA 2355 |||||||| || || ||| ||| | || || || ||| || |||||| | |||| | Sbjct 21123 GATAAACGTGTACCTAAATGTAATACGTTGGC--TATTTTAGCTCCACCTAATGCAGGTA 21180 Query 2356 AAAATTTTTTCTTTGACATGATTATGGCAATTTGTTTAAACTATGGACAATTAGGACAAG 2415 |||||||||| |||||| | | ||| |||||| || || || || | Sbjct 21181 AAAATTTTTTTTTTGACGCTGTAGCTTCGTTTTTTTTAAATTACGGGTGTTTGGGTACTG 21240 Query 2416 CAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGATTATTACTTTGGA 2475 | || | | ||| || || ||| ||||| | ||| | | ||||||||| Sbjct 21241 CTAATAAAACGAATAATTTCGCGTTTATGGAAGCAGCAGGCAAACGCCTCGTACTTTGGA 21300 Query 2476 ATGAACCAAACTATGAAAGC 2495 |||||||||||||||||||| Sbjct 21301 ATGAACCAAACTATGAAAGC 21320 >seq20 Length=1368841 Score = 82.4 bits (90), Expect = 3e-12 Identities = 174/257 (68%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 2237 TCAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATGTACT 2296 ||||||||| |||| |||||| | | | |||||| ||||||||| | || | Sbjct 1060957 TCAATTTGATAATAATACCGAAAATGTTTATTATTTTTTAACAGATTTAATAAACATAAT 1060898 Query 2297 TGATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGCCACCTAGTTCAGGCAA 2356 ||||||| | | || ||| ||| | || ||| || | | ||||||| | | || || Sbjct 1060897 TGATAAAATAATACCTAAATGTAATACATTAGCAATACTAGCTCCACCTAATGCTGGTAA 1060838 Query 2357 AAATTTTTTCTTTGACATGATTATGGCAATTTGTTTAAACTATGGACAATTAGG-ACAAG 2415 ||||| ||| |||||| | || | ||| | |||| ||||| ||||| || Sbjct 1060837 AAATTATTTTTTTGACGCGGTTGCTTCTTTTTTTATAAATTATGGGGTGTTAGGTACTGC 1060778 Query 2416 CAAACAGACATAATTTGTTTGCATTTCAAGAAGCTCCCAATAAAAGATTATTACTTTGGA 2475 ||| | ||| ||| ||||| ||| ||||| | |||| | ||| || | |||| Sbjct 1060777 CAATAAAACA-AATAACTTTGCGTTTATGGAAGCGGCAGGTAAACGTTTAGTATTGTGGA 1060719 Query 2476 ATGAACCAAACTATGAA 2492 |||||||||| |||||| Sbjct 1060718 ATGAACCAAATTATGAA 1060702 >seq1008 Length=50610 Score = 78.8 bits (86), Expect = 3e-11 Identities = 100/138 (72%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 2234 ATTTCAATTTGAGGATAACGACGAAAAAATCACTCAATTTTTAGTAGATTTAATTGATGT 2293 || ||||||||| |||| |||||| || | | |||||| ||||||||| || | Sbjct 17493 ATATCAATTTGATAATAATACCGAAAATATATATTATTTTTTAACAGATTTAATAAATAT 17434 Query 2294 ACTTGATAAACGAGTTCCAAAACAAAATGCTTTTGCAGTAATTTCGCCACCTAGTTCAGG 2353 | | |||||| || |||| ||| ||| | || ||| || | | ||||||| | |||| Sbjct 17433 AATAGATAAAAGAATTCCTAAATGTAATACATTAGCAATATTAGCTCCACCTAATGCAGG 17374 Query 2354 CAAAAATTTTTTCTTTGA 2371 |||||||| | | ||||| Sbjct 17373 CAAAAATTATATTTTTGA 17356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18312006865500