Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq4156 581 1e-162 >seq4156 Length=4061 Score = 581 bits (644), Expect = 1e-162 Identities = 964/1382 (70%), Gaps = 31/1382 (2%) Strand=Plus/Minus Query 2987 CGTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGG 3046 |||||||| ||||| || ||||||||||| ||| || |||||||| || |||||| Sbjct 3697 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 3638 Query 3047 GGCCTT--TTAAGGA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATT 3102 |||| || |||| |||| ||||||||| | |||||| ||| || ||| Sbjct 3637 CCCCTTACTTGAGGATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCG 3581 Query 3103 GTTGACCTCTCTCATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTT 3160 |||||| || ||||||| ||| | ||| | || | |||||||||| | || ||| Sbjct 3580 CATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTT 3523 Query 3161 CATGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTC 3220 || ||||| |||||||||||||| ||||| ||| | || || ||||| ||| | |||| Sbjct 3522 CAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTC 3463 Query 3221 TTTCCCCTCTGCGTCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACA 3280 |||| || |||||||||| | |||||||| |||| || || |||| || || || Sbjct 3462 TTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATG 3403 Query 3281 TTCCGCATCGTCATGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATG 3340 | || |||||||| |||||||| || ||||||||| |||| ||| ||||||||||||| Sbjct 3402 TCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATG 3343 Query 3341 CTCAGCCTCTGCCTTCTGTTACTTGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTA 3400 | ||||| || |||||| | | | ||| |||||||| | || | | || | Sbjct 3342 CCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCA 3283 Query 3401 CTATTGTTCCTG---CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACA 3457 | ||| |||| | ||||| || |||||| |||| |||| | ||| |||| | Sbjct 3282 CGATTAACCCTGATACCAATAAA---ATCCCTAAGCATTTGTTTCAGGGTTATTTGAATA 3226 Query 3458 TTTACAATAACTATTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTA 3517 | || || |||||||| || |||||||||||||| ||||||||||| ||||| | Sbjct 3225 TCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATG 3166 Query 3518 ATCTTAATGAGGATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGT 3577 | |||||| | ||||||||||||||| | |||||||||||||| || ||||| |||||| Sbjct 3165 AGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGA 3106 Query 3578 CTGCTCCGCTGCCTCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCA 3637 |||||||||| ||||| || || | | || ||||| | | | || || | Sbjct 3105 CTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTA 3046 Query 3638 TTGATATTATGGGTTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTT 3697 |||| ||||||||| ||||||| |||||||| | | || ||||| || || ||| || Sbjct 3045 TTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATT 2986 Query 3698 ACTTTATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATG 3757 |||| ||||||||||||| ||||||||| || ||||| ||| |||||| ||||| | Sbjct 2985 ACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACG 2926 Query 3758 CCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACGACGTTG 3817 | || ||||| || || ||||| |||| | | | ||||||| || || || || |||| Sbjct 2925 CTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTG 2866 Query 3818 ACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGTTTAAAC 3877 | || || |||||| | || | || || || |||||||| || || ||||| | ||||| Sbjct 2865 ATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAAC 2806 Query 3878 ACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGGCTCTGATTC 3937 | || |||||||| ||||| || ||||||||||| ||| | ||| | || || ||| Sbjct 2805 ATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTC 2746 Query 3938 GCTTCCCGCCTATCAGTCCGTTGGAGCACCATTATCTTGCTGGTAAGTCTCAGTTAACCT 3997 | || ||||||| | ||| || || ||| | ||| | || || | Sbjct 2745 GTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTT 2686 Query 3998 ATACCGACCTTGCTGGCGACCCGGCTCTGATTGGTAACTTGCCTCCTCGCGAGATTAGTT 4057 ||||||| ||||||||||||| | | || ||| |||||||| || || || ||| | Sbjct 2685 ATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATT-TCT 2627 Query 4058 ATCGA-GATCTGTTCCGTGATGGTCGTTCTGGTATTAAGATTAAAGTTGCCGAGTCTATT 4116 || | ||| | |||||| |||| ||| || ||| |||| |||| ||| | Sbjct 2626 ATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAG 2567 Query 4117 TGGTATCGTACTCATCCTGATTACGTTAACTTTAAGTATCATGATTTGCATGGATTCCCG 4176 ||||||||| | ||| || ||| | ||||| | | | || ||||| Sbjct 2566 TGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTCCCA 2507 Query 4177 TTCCTTGATGATGCGCCTGGTACATCTACTGGTGATAATCTTCAGGAAGCTATCCTTGTT 4236 ||| || | || ||| || |||||| || | || ||| | ||| || Sbjct 2506 TTCATTCAGGAACCGC---------CTTCTGGTG---ATTTGCAAGAACGCGTACTTATT 2459 Query 4237 CGTCATCAGGACTATGATGCTTGCTTCCAGTCTCAGCAGTTGCTACAGTGGAACAAACAG 4296 || || || || ||||| || |||||||| |||||| | |||||||| | ||| Sbjct 2458 CGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAG 2399 Query 4297 GCTCGCTATAACGTTAGTGTTTATCGCCATATGCCTACTGTACGTGATTCCATTATGACC 4356 | | | ||| || | ||||||||| || |||| || || ||||| || ||||| Sbjct 2398 GTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACT 2339 Query 4357 TC 4358 || Sbjct 2338 TC 2337 Score = 82.4 bits (90), Expect = 3e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 5648 AGATTGCTGGTATTCAGTCTGCCACTTCTCGTCAAAATACGAAGGATTCTGTTTATGCCC 5707 |||||||||| |||||||| || ||||| || || |||||||| || || ||||| | Sbjct 1191 AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGGTATATGCAC 1132 Query 5708 AGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGTCTAT 5762 | |||||||||||| ||| | || ||||| || |||||||||||||| Sbjct 1131 AAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTAT 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19362163754148