Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq4156 423 7e-115 >seq4156 Length=4061 Score = 423 bits (468), Expect = 7e-115 Identities = 804/1170 (69%), Gaps = 39/1170 (3%) Strand=Plus/Minus Query 2504 GGCAAATCTAAGGGTGCCCGTCTCTGGTATGTAGGCGGAACACAATACTAATCTTTTATG 2563 ||||| ||| || || ||||| ||||||||||| || ||||| |||| | | Sbjct 3703 GGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAAT--TGCA-- 3648 Query 2564 TGGGACCGCGGTCCCACTCTATTTAAGGATACAAAAATGTCTAACGTTCAAACATCTGCG 2623 ||| | ||| ||| || || |||||| || |||||||| ||||||| || Sbjct 3647 -GGGGCTTCGGCCCCT---TACTTGAGGATA-AATTATGTCTAATATTCAAACTGGCGCC 3593 Query 2624 GACCGTGTACCTCATGACTTATCTCACCTTGTCTTTGAGGCTGGTAAAATTGGCCGCCTC 2683 || ||| | || |||||| | || || |||| ||| |||||| | ||||| || || Sbjct 3592 GAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTT 3533 Query 2684 AAAACTATCTCTTGGACGCCTGGTGGTGCTGGTGACTCTTTCGAGTGTGATATGGTTGGC 2743 | || || || || || | | ||||| ||||| |||||| || |||||| Sbjct 3532 ATTACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGC 3473 Query 2744 GCTATTCGTCTGTCCCCTCTTCGTCGTGGCCTCGCTGTTGACTCACGCGTTGATATCTTT 2803 ||| | ||||| || || | ||||||||||| ||| ||||||| || || || ||| Sbjct 3472 GCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTT 3413 Query 2804 CCTTTCTATATCCCACACCGTCATATCTACGGTCAGCAGTGGATTAACTTTATGAAGGAT 2863 |||| ||| |||| || ||||| | || ||| | ||||||||||| || ||||||||| Sbjct 3412 ACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGAT 3353 Query 2864 GGCGTTAATGCCTCCCCTCTTCCTCCTGTTACATGCTCCTCTGGTTGG---GACTCTGCT 2920 || ||||||||| | ||||| || |||||| | | |||||| ||| ||| Sbjct 3352 GGTGTTAATGCCACTCCTCTCCCGACTGTTAA---CACTACTGGTTATATTGACCATGCC 3296 Query 2921 GCTTATCTCGGTACCATTCCGTCTTCTACCCTTAAAGTGCCTAAATTCTTACATCAGGGC 2980 |||| ||| || || ||| || |||| |||| | ||||| || |||||| Sbjct 3295 GCTTTTCTTGGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGT 3236 Query 2981 TATCTGAATATTTATAATAACTACTTCAAACCGCCTTGGTCTGATGACTTAACTTAC--- 3037 ||| ||||||| ||||| ||||| || ||| |||| ||| ||| || | | ||| Sbjct 3235 TATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGG----ATGCCTGACCGTACCGA 3180 Query 3038 -GCTAACCCATCCAATATGCCTTCTGAGGATTATAAATGG---GGCGTACGTGTCGCTAA 3093 |||||||| ||| || | | | ||| || | || | ||| | | Sbjct 3179 GGCTAACCCT---AATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCA 3123 Query 3094 CCTTAAATCTATCTGGACTGCGCCACTTCCACCGGATACTCGTACATCTGAAAACATGAC 3153 || ||| || |||||||| || ||||| || || ||| ||| | ||||| Sbjct 3122 TCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGAC 3063 Query 3154 TACTGGTACATCCACTATTGACATTATGGGCCTTCAAGCCGCATACGCTAAATTACATAC 3213 ||| ||| | |||||||||||||||| || ||||| || || ||||| || ||||| Sbjct 3062 GACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATAC 3003 Query 3214 GGAACAGGAACGTGATTACTTCATGACCCGTTACCGTGACATTATGAAAGAGTTCGGCGG 3273 || || |||||||||||||||||| ||||||| ||| |||| || || || Sbjct 3002 TGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGG 2943 Query 3274 TCATACATCCTATGATGGTGACAATCGTCCTCTTCTGCTCATGCGCTCTGAATTTTGGGC 3333 | | || || ||||| | |||||| |||||| | || ||||||||||| | | ||||| Sbjct 2942 TAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGC 2883 Query 3334 ATCTGGCTATGACGTAGACGGTACTGACCAATCTTCTCTCGGTCAATTCTCTGGTCGCGT 3393 |||||||||||| || || || ||||||||| | || | || || || |||||||| || Sbjct 2882 ATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGT 2823 Query 3394 TCAGCAGACCTTCAATCACAAAGTCCCACGCTTCTATGTTCCTGAGCATCGCGTAATTAT 3453 ||| ||||||| || || || || || |||| ||||||||||||| || || | Sbjct 2822 TCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTT 2763 Query 3454 GACTCTGGCGGTTACTCGCTTTCCGCCTACT--CATGAAATGGAAATGCACTATCTTGTA 3511 ||||| ||| || ||| |||||||||||| | ||| || || || || ||| Sbjct 2762 TACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAAC 2705 Query 3512 GGTAAAGAAAACTTAACTTATACCGATATTGCTTGTGACCCTGCACTG-ATGGCTAACCT 3570 | ||||| || |||||||||||||||||| | ||||||| || ||||| ||| | Sbjct 2704 GCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTT 2646 Query 3571 GCCACCTCGTGAAGTATCCTTAAAAGAATTCTTCC--ACTCCTCACCCGATTCTGCTAAA 3628 ||| || |||||| | || | || || | |||| || | | || ||| || Sbjct 2645 GCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCG--TCTAAGAAG 2588 Query 3629 TTCAAAATCGCTGAGGGCCAATGGTATCGT 3658 || || || |||||||| || ||||||||| Sbjct 2587 TTTAAGATTGCTGAGGGTCAGTGGTATCGT 2558 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 1168 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 1109 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 1108 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 1049 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 1048 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 989 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 988 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 936 Score = 150 bits (166), Expect = 6e-33 Identities = 322/481 (67%), Gaps = 15/481 (3%) Strand=Plus/Minus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 1715 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 1656 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 1655 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 1596 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1595 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 1536 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCTCTGCTATCTCTGGCATCCTTGCCGACTCTGG 4802 | | |||||| || | || || || || | | | ||||| | || | |||| Sbjct 1535 TATTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGG 1476 Query 4803 -CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCAT 4850 ||| | | || | | || || ||| | | | |||| | | Sbjct 1475 TAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCT 1416 Query 4851 GGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACTA 4907 || || || ||| | ||||||||| |||| || || ||||| || || || Sbjct 1415 TGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTA 1356 Query 4908 TCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTAG 4967 ||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 1355 TCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTC 1296 Query 4968 TCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTGA 5027 | | || ||| ||||| || || | ||||| || ||||| || || ||||| || || Sbjct 1295 TGCTGGTATGGTTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGA 1236 Query 5028 C 5028 | Sbjct 1235 C 1235 Score = 147 bits (162), Expect = 8e-32 Identities = 265/385 (69%), Gaps = 2/385 (1%) Strand=Plus/Minus Query 462 TAATCGAAGAATTGCAAGAATGCTATGACGTGCTCGGACAACTTGATATTAATAACACTA 521 |||| || |||||| | ||||||| | |||||| |||||||||||||||||||||| Sbjct 384 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 325 Query 522 TAGACCACAAACCCCTCGGTAATGACCATTGGAACCTCCTCTATGAAAAACCCGTATACA 581 |||||||| ||| || | || | ||| | | || || | || ||| Sbjct 324 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGT-TACG 266 Query 582 AACATTGGTATCA-GCTCGTTTCAAATCGACCCCTTAAAGATATCCGCGCCGATTACAAC 640 | || | || ||| | | | | || || ||||| ||||| |||| || || || Sbjct 265 CAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTATAAT 206 Query 641 TATGCAAAGGCTAAGGGTGTTAAAGATGAGTGCTCAAAAATCTTGGAGGAGTCAACTATG 700 || | || || ||| |||| |||||||| |||| | | |||||| || |||||| Sbjct 205 TACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATG 146 Query 701 AAGTCTCGACGTGGCTTTACCGTTCAAAGATTAATGAATGCTATGCGTACTGCCCATTCT 760 || || || | |||||| | |||| | || |||||||| ||||| || ||| || Sbjct 145 AAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCT 86 Query 761 AAGGGCTGGTATGTCGTATTCGATACTCTTACTCTAGCCGATGACCGCTTAAAGGATTTC 820 | || |||| | |||| || || ||||| || | || || ||||| ||| ||| || Sbjct 85 GATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTT 26 Query 821 TATGATAATCCCAATGCTCTTCGTG 845 |||||||||||||||||| | |||| Sbjct 25 TATGATAATCCCAATGCTTTGCGTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17733477284710