Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq4156 652 0.0 >seq4156 Length=4061 Score = 652 bits (722), Expect = 0.0 Identities = 980/1378 (71%), Gaps = 26/1378 (2%) Strand=Plus/Minus Query 2986 CGTAAAGGTGCTCGCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTAT-GGGCCTTCGG 3044 |||||||| ||||| || ||||||||||| ||| || |||||||| ||| |||||| Sbjct 3697 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 3638 Query 3045 GCCC---CTTAAGGATTATTAATGTCTAATGTACAAACTTCAGCTGAACGTGAAATTGTT 3101 ||| ||| ||||| | | ||||||||| | |||||| || || ||| | Sbjct 3637 CCCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCAT 3578 Query 3102 GACCTCTCTCATCTTG-CTT--TTGACTGTGGCATGATTGGTCGCTTGAAAACTGTTTCA 3158 ||||| || ||||||| ||| ||| ||| | || ||||||||| | | || ||||| Sbjct 3577 GACCTTTCCCATCTTGGCTTCCTTG-CTG-GTCA-GATTGGTCGTCTTATTACCATTTCA 3521 Query 3159 TGGACTCCTGTTATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTT 3218 ||||| |||||||||||||| ||||| ||| | || || ||||| ||| | |||||| Sbjct 3520 ACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTT 3461 Query 3219 TCTCCTCTGCGTCGTGGTTTAGCCATTGATTCTAAGGTTGACTTTTTCACTTTCTATATT 3278 ||||| |||||||||| | || ||||| |||| || ||| |||| ||||| ||| | Sbjct 3460 TCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTC 3401 Query 3279 CCGCATCGTCATGTTTATGGTGATCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCT 3338 || |||||||| ||||||||||| ||||||||| | || ||| ||||||||| |||| Sbjct 3400 CCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCC 3341 Query 3339 TCGCCGCTTCCTTCCGTTACTACTACTAAGTATCCGGATGATGCTGGTTATGTTGGTACT 3398 | || || || | |||| |||||| ||| || |||| | || | |||| || Sbjct 3340 ACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACG 3281 Query 3399 ATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTAT 3458 ||| ||| | | ||| || |||||| |||| |||| |||| ||||||| ||| Sbjct 3280 ATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTAT 3221 Query 3459 AATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAA-CTT 3517 || |||||||| ||||||||||||||||| ||||| || ||||| ||| | ||| Sbjct 3220 AACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTT 3161 Query 3518 AGATCGTGATGATTCTCGTTATGGATTCCGTTGTTGCCATCTTAAAACTATTTGGTCTGC 3577 | ||| |||||| |||||||||| |||||||| |||||||| |||| |||||| |||| Sbjct 3160 A-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGC 3102 Query 3578 TCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGA 3637 ||| |||||||| || ||| |||| || |||||| | | | || || ||||| Sbjct 3101 TCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGA 3042 Query 3638 TATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTATTT 3697 ||||||||| |||| || |||||||| | | || ||||| || || ||| ||| || Sbjct 3041 CATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTT 2982 Query 3698 TATGCAGCGTTACCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGA 3757 ||||||||||||| ||||||||| || ||||| ||| |||||| ||||| || || Sbjct 2981 CATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGA 2922 Query 3758 TAACCGACCGTTGCTTGTTATGCATACCGATTTTTGGGCTTCCGGTTACGACGTTGACGG 3817 ||||| || || ||||| |||| | || | ||||| || || || || ||||| || Sbjct 2921 CAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGG 2862 Query 3818 TACCGACCAATCTTCCCTTGGACAGTTTTCGGGGCGAGTTCAACAGACGTTTAAACACTC 3877 || |||||| | || | || |||||||| || || ||||||||||| | |||||| || Sbjct 2861 AACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTC 2802 Query 3878 AGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTT 3937 |||||||| ||||| || ||||||||||| ||| | ||| | ||| ||||| || Sbjct 2801 TGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTT 2742 Query 3938 CCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATAC 3997 ||||||| || ||| ||| || ||| | | | |||||||||||| Sbjct 2741 TCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATAC 2682 Query 3998 CGACCTTGCTGGTGACCCGGCTTTGATTGGTAATTTGCCGCCGCGTGAGATTTCTTATCA 4057 ||| ||||||| ||||| | |||| ||| || |||||||||||||| |||||| | Sbjct 2681 CGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAA 2622 Query 4058 GGACCTTTTCCGTGATGGTCGCCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTA 4117 ||| |||||||| |||| || | ||| ||||| |||| ||| | ||||| Sbjct 2621 GGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTA 2562 Query 4118 TCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAGGGTTTCCCGTTCC 4176 |||| | || |||||| || | ||||| | ||||| || ||||| ||| Sbjct 2561 TCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCA 2503 Query 4177 TTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACC 4236 || | || ||| || ||||||| | |||| || | || ||| || Sbjct 2502 TTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCC 2455 Query 4237 ATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTC 4296 | |||| ||| | ||||||||||| |||||| | |||||||||| ||||| | Sbjct 2454 ACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTA 2395 Query 4297 GTTATAATGTTAATGTTTATCGCCATATTCCTACTGTTCGTGATTCTATTATGACCTC 4354 | |||||| | ||||||||| || | || || ||| ||||| || ||||| || Sbjct 2394 AATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTC 2337 Score = 87.8 bits (96), Expect = 7e-14 Identities = 241/361 (67%), Gaps = 34/361 (9%) Strand=Plus/Minus Query 5252 TGATGCTGGTATTCAGTCTGCTATTCAGGGTTCTAATGTTCCTCCTGCTGGTCAATTGCC 5311 ||||||||||||| | ||||| ||||| || |||||| ||||| ||| | | | | Sbjct 1571 TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATATTCCTAACCCTGATGA---GGC 1515 Query 5312 CGCTTCTAATACT---TCTGGTGTTATGGCTGATGCTGGTAATATGATTCGTAATGCTGG 5368 ||| ||| | | ||||||| ||||||| | |||||||| | || | | || || Sbjct 1514 CGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAA-AGGACTTCT--TGAAGG 1458 Query 5369 TAGAGCTTTGCTTGATGGTACGATTCAGGCTGGCTCTGATAAGGTTAAAGAGGCTCTTAT 5428 || | |||| | ||| || ||| | | | ||||||||| | ||| | Sbjct 1457 TA---CGTTGCAGGCTGGCAC--TTCTGCC-GTTTCTGATAAGTT-------GCTTGATT 1411 Query 5429 TGATAAGTTGG--TTGGAGGTAATGATGCTAAAGACCGAGGAAAGGCAACCCGTGATTAC 5486 || ||||| |||| || || ||| || |||||||| || |||||||| Sbjct 1410 TG----GTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT 1355 Query 5487 TTGGCAGCGGCTTTCCCTGAGCTCAACCCGTGGGAGCGTGCTGGAGCTGGTGCTTCCACT 5546 | || || || || |||||||| || | |||||||||||||| |||| ||||||| || Sbjct 1354 CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCT 1295 Query 5547 GCCGG---GTTAGAGTCTTCTGCTCAGAATCAACAAAAAGAGATGCTTAAAATGCAACTG 5603 || || | | || | | ||||| ||||||||| | ||||||||||||| Sbjct 1294 GCTGGTATGGTTGACGCCGGATTTGAGAAT---CAAAAAGAGCTTACTAAAATGCAACTG 1238 Query 5604 G 5604 | Sbjct 1237 G 1237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19368563411644