Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq4156 462 8e-127 >seq4156 Length=4061 Score = 462 bits (512), Expect = 8e-127 Identities = 948/1381 (69%), Gaps = 41/1381 (3%) Strand=Plus/Minus Query 2464 TAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTTCTAGGGGCTTCGG 2523 |||||| ||||| || |||||||| || || |||||| |||| | ||||||||||| Sbjct 3695 TAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAAT--TGCAGGGGCTTCGG 3638 Query 2524 CCCCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCGCTGACCGCATTCCTAA 2583 ||||| || || |||||| | |||||||| |||||||| ||| || || || || | Sbjct 3637 CCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCA 3579 Query 2584 CGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTTTAAAAACTATCTCCTG 2643 |||||||| || || | |||| |||||| | || || ||| | | || || || Sbjct 3578 TGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAAC 3519 Query 2644 GACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAGGCGCTATTCGCCTTTC 2703 ||||| ||| ||||||||||||| || || | || || |||||| | || ||||| Sbjct 3518 TACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTC 3459 Query 2704 TCCACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCTTCTCTTTCTATATTCC 2763 |||| | ||||| |||||||| | |||||| || || || || |||| ||| | || Sbjct 3458 TCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCC 3399 Query 2764 GCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAAGCTGGCGTTAATGCCAC 2823 |||||||| | |||||| || | | ||| | |||||||| | ||| ||||||||||| Sbjct 3398 TCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCAC 3339 Query 2824 TCCTCTCGCACCTGTTACTACTGCCTCTGGCTGGGATGCTTCTGCC---TATCTTGGCAC 2880 ||||||| | |||||| ||| | ||| | || |||| | ||||||||| Sbjct 3338 TCCTCTCCCGACTGTTAACACTAC---TGGTTATATTGACCATGCCGCTTTTCTTGGCAC 3282 Query 2881 TATTCCATCCTCAAACCTC-AAGGTTCCTAAATTCTTACATCAAGGATACCTTAATATTT 2939 ||| | ||| | ||| || | ||||| || ||| || || | ||||| | Sbjct 3281 GATTA-ACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCT 3223 Query 2940 ACAACAACTACTTTAAGCCACCGTGGGATGC-TGACCTTACATACGCTAACCCATCTAAC 2998 | |||||||| ||||| | |||||| |||| ||||| ||| | |||||||| ||| Sbjct 3222 ATAACAACTATTTTAAAGCGCCGTGG-ATGCCTGACCGTACCGAGGCTAACCC---TAAT 3167 Query 2999 ATGCCTGAACAGGATTATAAATGG---GGCGTTCGTGTC-GCTAACTTAAAATCTATCTG 3054 || | | || ||| || | || | ||| | || | || |||| | || || Sbjct 3166 GAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATTTG 3108 Query 3055 GACCGCCCCCTTACCTCCTAACTCTAAAACATCAGAGACTATGACCACTGGCGCTACGTC 3114 ||| || || | |||||| | || | || ||||| ||| | || || Sbjct 3107 GACTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATC 3048 Query 3115 TATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACACCCAACAAGAACGTGA 3174 |||||| |||||||| |||||||||||||||||||| ||||| || | ||||||||||| Sbjct 3047 TATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGA 2988 Query 3175 CTACTTCATGACTCGCTATCGCGATATTATGAAAGACTTCGGAGGTCACACCTCCTATGA 3234 ||||||||| || || | ||| |||| || |||||| | ||||| ||||| Sbjct 2987 TTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGA 2928 Query 3235 CGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGGCCTCTGGCTATGACGT 3294 || ||| ||||||||| | || | ||||||||| | | ||||| ||||||||||| || Sbjct 2927 CGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGT 2868 Query 3295 CGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCGTCCAACAAACATTCAA 3354 || || ||||||||| | || ||||| ||||| || ||||| || ||||| || | || Sbjct 2867 TGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAA 2808 Query 3355 TCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTATGACTCTCGCCGTTAC 3414 || || || || |||| ||| ||||| || ||| || | ||||| || || Sbjct 2807 ACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGT 2748 Query 3415 TCGCTTCCCTCCTACT--CATGAAATGGAGATGCACTATCTTGTCGGTAAAGAATCTTTA 3472 ||| || || |||||| | ||| ||||| || || ||| || ||||| |||| Sbjct 2747 TCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTG 2690 Query 3473 ACCTATACCGACCTCGCCTGCGACCCTGCTCT-TATGGCTAACCTGCCTCCGCGCGAAGT 3531 || |||||||| | || ||||||||| | | |||||| ||| |||| ||||| ||| | Sbjct 2689 ACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAAT 2631 Query 3532 ATCCCTTAAGGAATTCTTCCACTCCTCGCCGGACTCCGCT---AAGTTCAAAATTGCCGA 3588 || | ||||| | |||| | || | || || || ||||| || ||||| || Sbjct 2630 TTCTATGAAGGATGTTTTCC-GTTCTGG--TGATTCGTCTAAGAAGTTTAAGATTGCTGA 2574 Query 3589 GGGCCAATGGTATCG-CACGCAGCCT--GACCGCGTCGCATTCCCTTATAACGCACTTGA 3645 ||| || |||||||| | || |||| | | || | | ||||| || ||||| Sbjct 2573 GGGTCAGTGGTATCGTTATGC-GCCTTCGTATGTTTCTCCT--GCTTATCACCTTCTTGA 2517 Query 3646 CGGCTTTCCTTTCTACTC-TGCTCTGCCGTCTACTGACTTAAAACAACGTGTCCTAGTTA 3704 ||||| || ||| | || | | ||| ||| ||| || || |||| || || || Sbjct 2516 AGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTC 2458 Query 3705 ACACTGATAACTACGACGAAATCTTTCAGTCTATGCAACTCGCACACTGGAATATGCAAA 3764 | || | || ||| | || ||||| | || | || ||||||| || Sbjct 2457 GCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGG 2398 Query 3765 CTAAATTTAATACTACCGTCTATAGACATATGCCTACGACTCGTGATTCAATCATGACGT 3824 |||||||||| ||||| ||| | || |||| || ||||| |||||||||||||| | Sbjct 2397 TTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTT 2338 Query 3825 C 3825 | Sbjct 2337 C 2337 Score = 208 bits (230), Expect = 3e-50 Identities = 539/808 (67%), Gaps = 44/808 (5%) Strand=Plus/Minus Query 4138 TAATCAGGTCTTCTCCGTCTGTGCTCACATCACATCTGACGTGGACCCTAAATATATTGC 4197 ||||||||| | || || ||||| | || | | ||| | |||||||||| | |||| Sbjct 2044 TAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC 1985 Query 4198 GTGCCTCGTTCGCTTTGAGGTCACTGCTGGTACCACTCCTACCGCTATGCCTCCTGTCTA 4257 || | |||||||||||| || | | | | ||| | || | || ||| ||| Sbjct 1984 CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTAC--CCTC----CCGACTGCCTA 1931 Query 4258 TGATGCTTACCCTATCGCTGGTTACTATGACGCTGGCTCTTATACTGTTGAAGACTGCGC 4317 ||||| ||| ||| | | |||| | |||| | ||| | |||||| || | ||||| | Sbjct 1930 TGATGTTTATCCTTTGGATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGT 1871 Query 4318 TACTATT--CCTACTCACGCTGTCTCTTCTGGCAACGATGTATATGTCGGCCTTATGCTT 4375 |||||| | | || | | | | | ||||| |||| ||||| || | ||| || Sbjct 1870 GACTATTGACGTCCTTCCCCGTACGC--CGGGCAATAATGTTTATGTTGGTTTCATGGTT 1813 Query 4376 TTCTCTCGCATGTGGCCCGTTGCAAAACTATCCGGTATCGCTTCCCTTAATCAGGTAAAC 4435 | ||| | | ||| | | ||| ||| | | ||| || |||||||| | Sbjct 1812 TGGTCTAACTTTA---CCGCTACTAAATGCCGCGGATTGGTTTCGCTGAATCAGGTTATT 1756 Query 4436 AAGGAAGTAACCGTTCTCCAACCTCTTAAATAAGGT-ATTCTCTATGTTTGGTGCAATCG 4494 || || | | |||||| || ||||| | |||| ||| |||||||||||| || | Sbjct 1755 AAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATT---TATGTTTGGTGCTATTG 1699 Query 4495 CTGGCGGTATCGCCTCATCTCTTGCTGGCGGACTCATCAACAAAGCCTTTGGGGGCGGTC 4554 |||||||||| || || |||||||||| || ||| ||| ||||| ||||||| Sbjct 1698 CTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTC 1639 Query 4555 AATCCGCCTCCTCTACTGGCGTTCAAGGTGATGTCCTCGCTTC---TGACAATAACGTA- 4610 || ||| |||| |||| ||||||||||||| || ||| | | |||||| ||| Sbjct 1638 AAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAG 1579 Query 4611 --ATCGGTGCTAATGATGCTGGTATCAAATCCGCTATTCAAGGCTCTAATCCACCCAATG 4668 || || |||||||||||| ||||| || ||||||||||||||| || || Sbjct 1578 GCATGGG------TGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAATATTCCTAACC 1525 Query 4669 GCCAACAAGCTGCTCCCAATGCTATTTCGGGCGTTCTCGCTGACACTGGCAAA-GACGCC 4727 | | || || || | | | |||| || | | | ||| | |||| ||| ||| | Sbjct 1524 CTGATGAGGCCGCCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTC 1465 Query 4728 CT--ATCTTCAAT-CA--CTGGC---GCTGGCGT---TAATAAACTTATGGAAAAAATCG 4776 | | | | | || ||||| ||| ||| | |||| | | || | | Sbjct 1464 TTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTG 1405 Query 4777 GACTATCT---AAAACTGCTGCTGATAAAGGCAAGGACACAAAGGATTATCTTGCTTCTG 4833 |||| | || |||| ||||||||||| ||||| || |||||||||||| ||| Sbjct 1404 GACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTG 1345 Query 4834 CATTCCCCGACCTCAACCCGTGGGAACGTGCTGGCGCTGGTGCTTCGTCTGCTGGCATGG 4893 |||| || || || || | ||||| |||||||| |||| |||||| |||||||| |||| Sbjct 1344 CATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG 1285 Query 4894 TTGACGCTGGCTTCCAAAACCAAAAAGA 4921 ||||||| || || | || |||||||| Sbjct 1284 TTGACGCCGGATTTGAGAATCAAAAAGA 1257 Score = 167 bits (184), Expect = 8e-38 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 5013 TCCCGGCAAAATACTAAGGATGCTGTCTATGCTCAAAACGAGATGCTCGAATATAACCAA 5072 || || || ||||| || || || ||||| ||||| |||||||| | ||| | || Sbjct 1165 TCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAG 1106 Query 5073 AAAGAATCTATGTCACGCGTTGGCTCTATTCTCGAAAACACAAGCCTCACCAAACAACAA 5132 || || |||| | ||||||| |||||| | |||||||| | || |||| ||||| Sbjct 1105 AAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAG 1046 Query 5133 CAAACTTCTGAAATTATGCGGCAGATGCTTACTCAAGCTCAAACCGCAGGTCAACATTTT 5192 || ||| || |||||||| || |||||||||||||||||||| || ||||| ||||| Sbjct 1045 CAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTT 986 Query 5193 ACAAATGACCAAATCAAAGAACTTACACGAAAAGTTGGTGCTGATATTGA 5242 || |||||||||||||||||| | || || || ||| ||||||| |||| Sbjct 985 ACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 936 Score = 109 bits (120), Expect = 2e-20 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 653 AAGGGTATTAAGGATGAATGCTCGAAAATCCTTGAGGAATCCACCATGAAATCACGTAGA 712 || |||||||||||||| || || | | | || |||| ||||| |||||||| |||||| Sbjct 193 AAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGA 134 Query 713 GGCTTTACCGTACAAAGACTAATGAATGCTATGCGCACTGCCCACACTGAGGGCTGGTAC 772 |||||| | | || | | |||||||| ||||| || || |||| || |||| Sbjct 133 GGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCATGCTGATGGTTGGTTT 74 Query 773 GTTGTATTCGATACTCTTACTCTCGCCGATGACCGCCTTAAGGATTTCTATGATAATCCC 832 | || || || ||||| || | || || ||||| | ||| || |||||||||||| Sbjct 73 ATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATAATCCC 14 Query 833 AATGCTCTCCGTG 845 |||||| | |||| Sbjct 13 AATGCTTTGCGTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442292435755