Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq4156 607 3e-170 >seq4156 Length=4061 Score = 607 bits (672), Expect = 3e-170 Identities = 970/1378 (70%), Gaps = 32/1378 (2%) Strand=Plus/Minus Query 3013 AAAGGCGCTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCC 3072 |||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 3694 AAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCC 3635 Query 3073 CTA---TAAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGA 3129 || | ||||| | | |||| || | |||||| ||| || ||||| || || || Sbjct 3634 CTTACTTGAGGATAAATTA-TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGA 3576 Query 3130 CCTTTCTCATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTAAAGGTTGTTTCTTGGAC 3189 |||||| ||||| | || ||| || | ||||||||| | | |||| || Sbjct 3575 CCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTAC 3516 Query 3190 TCCTGTTGTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCCCC 3249 ||| ||| | || || || || || ||| | || |||||||| | || ||||| || Sbjct 3515 TCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCC 3456 Query 3250 GCTTCGTCGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCTCA 3309 | ||||||||||||||| |||||||| ||| ||| | || || |||||||||||||| Sbjct 3455 ATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCA 3396 Query 3310 TCGTCATGTATATGGTGAGCAGTGGATTGATTTTATGAAGCAAGGTGTTGATGCTGCTCC 3369 |||||| || |||||||| ||||||||| | || |||||| | |||||| |||| |||| Sbjct 3395 TCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCC 3336 Query 3370 TTTGGCCCCTGTTCAGTGCTCTCGCGGTTGGGATAGTGCTCAG------TATCTTGCTAC 3423 | | | ||||| | | || |||| ||| || || | ||||| || Sbjct 3335 TCTCCCGACTGTTAA---CACTACTGGTT---ATATTGACCATGCCGCTTTTCTTGGCAC 3282 Query 3424 TATTCCGTCTAGTAACTTAAAGGTTCCTAAG--TTTCTTCATCAAGGTTACCTGAACATT 3481 ||| || || | || | |||||| ||| || ||| ||||| |||| || Sbjct 3281 GATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATC 3224 Query 3482 TACAATAATTACTTTAAAGCTCCGTGGATGGATGACCTGACTTATGCCAACCCGTCTAAT 3541 || || || || |||||||| ||||||||| ||||| || | || ||||| | | Sbjct 3223 TATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAG 3164 Query 3542 ATGGAGGGTGAAGATGTTCGTTTTGGTGTTCGTGCATGTAACTTGAAAACTATTTGGACT 3601 | | || |||| ||||| |||| | ||| || | | |||| ||||||||| Sbjct 3163 CTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACT 3104 Query 3602 GCTCCGCTTCCTCCGGATACTGAAACCTCTCATTCTATGGAGACTGAAACCAACTCCATT 3661 |||||||||||||| || ||||| |||| ||| |||| |||| || ||| Sbjct 3103 GCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATT 3044 Query 3662 GACATTATGGGTTTGCAGGCCGCTTATGCTCAATTACATACTGAGCAGGAGCGTGATTAC 3721 |||||||||||| |||| || ||||||||| | || |||||||| || || ||||||||| Sbjct 3043 GACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTAC 2984 Query 3722 TTCATGACTCGTTATCGTGATATTGTTAACGAATTTGGAGGTAGTACTTCTTATGATGCG 3781 |||||| ||||| | |||| || || ||||||||||| || |||||||| || Sbjct 2983 TTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCT 2924 Query 3782 GATAATCGTCCTTTGCTTGTTATGCATTCTGAGTTCTGGGCCTCAGGCTATGATGTTGAC 3841 || || |||||||| ||||| |||| ||| | ||||||| || |||||||||||||| Sbjct 2923 GACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGAT 2864 Query 3842 GGCACCGACCAAAGCTCTCTCGGTCAGTTCTCCGGTCGTGTCCAGCAGACGTTTAAGCAT 3901 || || ||||||| || | || ||||| || |||||||| || ||||| | ||| ||| Sbjct 2863 GGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACAT 2804 Query 3902 TCAGTACCGCGATTCTTCTGCCCTGAGCATGGCACTATGTTCACACTCGCATTGGTCCGC 3961 || || ||||| ||||| |||||||||||||||||||| || || || | || || Sbjct 2803 TCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGT 2744 Query 3962 TTCCCGCCGACTC--ATGAAATGGAGATGCATTACTTAGTTGGTAAAGAAGATTTGACTT 4019 || ||||| ||| | ||| ||||| || ||| | | ||||| | |||||||| Sbjct 2743 TTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTT 2686 Query 4020 ATACTGATTTGGCTTGTGACCCTGCTTTG-ATGGCTAACTTGCCTCCTCGTGAGGTTAAT 4078 |||| ||| | ||| | ||||||| |||| ||||| |||||||| || ||||| || | Sbjct 2685 ATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCT 2627 Query 4079 ATGTCTCAGTTCTTCCATTCTGGAAGTGCTAGTGCTAAGTTTAAGATCGCTGAAGGTCAG 4138 ||| | | |||| |||||| | | | ||||||||||| ||||| |||||| Sbjct 2626 ATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAG 2567 Query 4139 TGGTATCG-CATGCAGCCTGATCG--CGTTGCATTGCCGTATAACTATCTTGATGGTTTT 4195 |||||||| |||| |||| ||| ||| | | ||| || |||||| || || Sbjct 2566 TGGTATCGTTATGC-GCCT--TCGTATGTTTCTCCTGCTTATCACCTTCTTGAAGGCTTC 2510 Query 4196 CCGTTCTATAGCGCGATTCCGTCTGATGATATTAAGCAGCGCGTTCTGGTTAATACTGAT 4255 || ||| | | || |||| |||| | | | ||||| || || || Sbjct 2509 CCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCAT 2450 Query 4256 AACTACGATGAGGTTTTCCAGTCTATGCAGCTTGCGCACTGGAATATGCAGACTAAGTTT 4315 | || || || ||||||||| | ||| | ||| ||||||| ||| ||| ||| Sbjct 2449 GATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTT 2390 Query 4316 AATTGCACCATTTATCGTAATATGCCGACCACTCGCGACTCTATTATGACCTCTTGAT 4373 ||| ||| ||||||| ||| |||||||||||||||| || || ||||| || |||| Sbjct 2389 AATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 2332 Score = 156 bits (172), Expect = 2e-34 Identities = 282/407 (69%), Gaps = 18/407 (4%) Strand=Plus/Minus Query 5443 AAGGACAAGCAACCCGTGATTACTTGGCTGCGGCCTTCCCTGAGCTCAATGCATGGGAAC 5502 ||||| | | || |||||||| | ||||| || || |||||||| ||||| ||||| | Sbjct 1377 AAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGC 1318 Query 5503 GTGCTGGAGCTGGTGCTTCCGGTGCCGGATTGGAGTCTTCCGGCC---AGAATCAGCAAA 5559 ||||||| |||| ||||||| ||| || ||| |||| ||||||| || Sbjct 1317 GTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGAGAATCA---AA 1261 Query 5560 AGGAGTTGATGCGTATGCAGCTGGATACTCAGAAGGATATTGCTAAGATGCAAATGCATA 5619 | ||| | | ||||| ||||| | |||||| || ||||| ||||||||| | | Sbjct 1260 AAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGA 1201 Query 5620 ATAATTTGCAGATTGCTGGTATTCAGTCCGCTACTTCTCGCGAGAATACGAAGGATTCAG 5679 | | |||||||||| |||||||| || ||||| ||| |||||||||| || | Sbjct 1200 CTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 1141 Query 5680 TTTATGCTCAGAATGAGATGCTTAAATTTAATCAACAGGAGTCACAGGCACGCGTTGAGT 5739 | ||||| || |||||||||||| | | | || ||||||| || ||||||| || Sbjct 1140 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 1081 Query 5740 CTATCCTCGCCAACACTGACCTTAC--GGCTA-AACAGGCTGCCCATGAAATTATGAG-- 5794 |||| | | ||||| | ||| | || | | |||| | || || |||||| | Sbjct 1080 CTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCC---GAGATTATGCGCC 1024 Query 5795 -AATGGCCCTTACTCGTGCTCAGGAGACTGGTCAGCATTTAACTAAT 5840 |||| ||||||| ||||| | |||||||| |||| || ||| Sbjct 1023 AAATG---CTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAAT 980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19301367007936