Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq4156 511 2e-141 >seq4156 Length=4061 Score = 511 bits (566), Expect = 2e-141 Identities = 1047/1522 (69%), Gaps = 63/1522 (4%) Strand=Plus/Minus Query 2466 GGCAAATCTAAAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTCTAAGG 2525 ||||| |||||| ||||| || |||||||| || || |||||| |||| | ||| Sbjct 3703 GGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGC--AGG 3646 Query 2526 GGCTTCGGCCCCTCTATTTAAGGATACAAAATGTCTAACGTACAAACTTCCGCTGAACGT 2585 ||||||||||||| || || |||||| | |||||||| | |||||| ||| || ||| Sbjct 3645 GGCTTCGGCCCCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGT 3587 Query 2586 ATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTTAAAACT 2645 || ||||||||||| || ||||| | ||| |||||| | || || || |||| || Sbjct 3586 ATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACC 3527 Query 2646 ATCTCCTGGACTCCTGTTGTCGCTGGTGATTCTTACGAAACTGAAATGGTAGGCGCTATT 2705 || || ||||| ||| ||||||| || || | ||| | || || |||||| | Sbjct 3526 ATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTC 3467 Query 2706 CGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACGTCTTTACTTTC 2765 ||||||||||| | |||||||| || ||| | |||||| || ||| | |||||||| Sbjct 3466 CGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTT 3407 Query 2766 TATATCCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTATGAAGACTGGCGTT 2825 ||| ||||||||||||| || |||||| |||| |||||| | || |||||| ||| ||| Sbjct 3406 TATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTT 3347 Query 2826 AACGCTACTCCTCTGGCTCCGGT-AACTTGTTCCTCTGGCTGG---GATTCTGCTGCCTA 2881 || || |||||||| | | || ||| | |||| | || ||| || | Sbjct 3346 AATGCCACTCCTCTCCCGACTGTTAACA----CTACTGGTTATATTGACCATGCCGCTTT 3291 Query 2882 TCTTGGCACTATC--CCGTCA-ACTAATTTGAAGGTTCCTAA--ATTCCTTCATCAATCT 2936 ||||||||| || || | | || ||| || | ||||| ||| || ||| | Sbjct 3290 TCTTGGCACGATTAACCCTGATACCAAT---AAAATCCCTAAGCATTTGTT--TCAGGGT 3236 Query 2937 TATCTCAATATTTACAACAACTACTTTAAGCCGCCGTGGTCTAATGACCTCACCTATGCT 2996 ||| | ||||| || |||||||| ||||| |||||||| ||||| ||| | ||| Sbjct 3235 TATTTGAATATCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCT 3176 Query 2997 AACCCATCTAATATGCCCGCTGAGGATTACAAATGG---GGCGTTCGTGTC-GCTAACTT 3052 ||||| |||| || | | ||| | | || | ||| | || | || Sbjct 3175 AACCC---TAATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTC 3119 Query 3053 AAAATCTATCTGGACCGCGCCCCTTCCTCCTGATTCATTAACTAAGCAGG-ATATGACTA 3111 |||| | || ||||| || || ||||||||||| | | | || | | ||||| | Sbjct 3118 AAAAAC-ATTTGGACTGCTCCGCTTCCTCCTGAGAC-TGAGCTTTCTCGCCAAATGACGA 3061 Query 3112 CTGGCGCTACCAC---TATCGATATTATGGGCCTACAAGCTGCCTATGCTAAACTCCACA 3168 || ||||||| ||| || |||||||| || |||||||| |||||||| | || | Sbjct 3060 CTT---CTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATA 3004 Query 3169 CTGAACAGGAACGTGACTATTTCATGACTCGCTACCGCGATATTATGAAAGACTTTGGCG 3228 |||| || |||||||| || |||||| || |||| ||| |||| ||||| | Sbjct 3003 CTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAG 2944 Query 3229 GTCACACCTCCTACGACGGTGATAACCGTCCTCTGCTCCTGATGCGCTCTGAATTTTGGG 3288 || | ||||| || |||| ||| ||||||||| | || | ||||||||| | | |||| Sbjct 2943 GTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGG 2884 Query 3289 CCTCTGGCTATGACGTCGACGGTACTGACCAAACTTCATTGGGTCAGTTCTCTGGTCGCG 3348 | ||||||||||| || || || ||||||||||| || || || ||||| |||||||| | Sbjct 2883 CATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTG 2824 Query 3349 TCCAACAAACCTTTAATCATAAAGTGCCTCGCTTCTATGTTCCTGAGCATGGCGTAATTA 3408 | ||||| |||| ||| ||| ||||| || |||| |||||||||||||||| || Sbjct 2823 TTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGT 2764 Query 3409 TGACTTTATCTGTTACTCGCTTCCCTCCTACT--CACGAAATGGAAATGCACTATCTCGT 3466 | ||| | | || ||| || || |||||| || ||| || || || || || Sbjct 2763 TTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGACTAAA--GAGATTCAGTACCTTAA 2706 Query 3467 CGGTAAGGAATCTCTGACTTATACTGACATTGCCTGTGACCCTGCTCT-TATGGCTAACC 3525 || ||| | || |||||||||| || ||||| | ||||||| | | |||||| ||| Sbjct 2705 CGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTGTATGGC-AACT 2647 Query 3526 TGCCTCCGCGTGAAATTGAGGTAAAAGACCTCTTTCACTCTGCTGGT---ACTGGTAAAT 3582 |||| |||||||||||| | || || | || | |||| || | || || | Sbjct 2646 TGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT 2587 Query 3583 TCAAAATTGCCGAAGGTCAATGGTATCGTACTCAGCCTGACCGCGTTGCCTTCC--CTTA 3640 | || ||||| || ||||| ||||||||| | |||| ||| | ||| |||| Sbjct 2586 TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTC--TCCTGCTTA 2529 Query 3641 TAACGCTCTTGACGGCTTCCCTTTCTATTC-TGAACTGCCGTCTAATGATATTCTCGAAC 3699 | || |||||| |||||||| ||| |||| |||| ||| ||| |||| | | |||| Sbjct 2528 TCACCTTCTTGAAGGCTTCCCATTC-ATTCAGGAACCGCCTTCTGGTGATTTGCAAGAAC 2470 Query 3700 GTGTACTTGTTCGAACTGATAACTATGATGAAATCTTCCAGTCTATGCAACTTGCACACT 3759 | |||||| |||| || | ||||| | |||||||| | || | || | Sbjct 2469 GCGTACTTATTCGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGT 2410 Query 3760 GGAACATGCAAACTAAATTTAACACTACTGTATATCGTCATATGCCTACCACTCGTGATG 3819 |||| | || ||||||||| || || ||||| || |||| |||||||| ||| Sbjct 2409 GGAATAGTCAGGTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATT 2350 Query 3820 GCATCATGACGTCATAAAACAAAACGTTGAACGGGTACAAATTTTAATTTGTGCCTGTTC 3879 |||||||| || | | |||| |||| | || | || ||| ||| | Sbjct 2349 CAATCATGACTTCGT--GATAAAAGATTGA--GTGT-GAGGTTATAA----CGCCGCTGA 2299 Query 3880 AAGGTTGAACAAGCGAAGCGCGTTAGCTAACTTACTTAAGGAAATT-CTCATGTTTCAAA 3938 |||||| ||||||||||||| ||| | | ||| |||| || |||||||||| | Sbjct 2298 GGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGCTT-AGGAGTTTAATCATGTTTCAGA 2240 Query 3939 CTTATCTCTCTAAACATAATTC 3960 ||| | | ||| |||||||| Sbjct 2239 CTTTTATTTCTCGCCATAATTC 2218 Score = 183 bits (202), Expect = 1e-42 Identities = 659/1047 (63%), Gaps = 71/1047 (7%) Strand=Plus/Minus Query 4445 CTCCAACCTCTTAAATAAGGTCTAATCTATGTTCGGTGCAATCGCTGGCGGTATCGCCTC 4504 ||||| || ||||| | |||| || |||||| ||||| || ||||||||||| || || Sbjct 1740 CTCCAGCCACTTAAGTGAGGTG--ATTTATGTTTGGTGCTATTGCTGGCGGTATTGCTTC 1683 Query 4505 CTCTCTCGCTGGTGGACTCCTGAACAAAGCATTCGGGGGCGGTTCTTCCGCTCCCCAATC 4564 |||| |||||||| | || ||| || || |||||| || || Sbjct 1682 TGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGG 1623 Query 4565 TGGCGTTCAAGGTAATGTCCTCGCTACTGA---CAATAATGTA---ATCGGTGCTAATGA 4618 |||| |||||||| |||| || ||||| || ||||| |||| || |||| | Sbjct 1622 TGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTG------A 1569 Query 4619 TGCTGGTATCAAATCCGCTATTCAGGGTTCTAATCCTCCCAATGGTCAACAAGCTGCTCC 4678 ||||||||| ||||| || ||||| || |||||| ||| || | | | || || || Sbjct 1568 TGCTGGTATTAAATCTGCCATTCAAGGCTCTAATATTCCTAACCCTGATGAGGCCGCCCC 1509 Query 4679 CAATGCTATATCGGGCGTTCTTGCCGATACTGGCAAAG-ACGCCCT--ATCTTCAAT-CA 4734 | | | | || || | | | || | |||| |||| || | | | | | | || Sbjct 1508 TAGTTTTGTTTCTGGTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCA 1449 Query 4735 --CTGGCGCT---GGCGTTA---ATAAACTTATGGAAAAAATCGGACTCTCTA--AAGA- 4783 ||||| || | |||| |||| | | || | ||||| | ||| Sbjct 1448 GGCTGGCACTTCTGCCGTTTCTGATAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTC 1389 Query 4784 TGCTGCTGCTAAAGGTAAGGATACGAAAGATTATCTTGCTTCTGCGTTCCCCGAACTCAA 4843 ||| |||| |||||| |||||||| |||||||||||| |||| || || || || || Sbjct 1388 TGCCGCTGATAAAGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAA 1329 Query 4844 CCCGTGGGAACGTGCTGGCGCTGGTGCTTCTTCTGCTGGAATGGTTGATGCGGGATTCCA 4903 | ||||| |||||||| |||| |||||| |||||||| |||||||| || ||||| | Sbjct 1328 TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGACGCCGGATTTGA 1269 Query 4904 AAACCAAAAGGAATTAACTCGCATGCAGCTTGACNNNNNNNNNNNNNNNNNNNNNNNNNN 4963 || ||||| || | ||| ||||| || ||| Sbjct 1268 GAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCA 1209 Query 4964 NNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAGTCTGTTACTTCTCGGCAAAATACTAA 5023 || ||||| | ||||| || || ||||| || Sbjct 1208 AAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAA 1149 Query 5024 GGACTCTGTGTATGCTCAAAACGAAATGCTCCAATACAACCAAAAAGAATCTATGTCACG 5083 ||| || ||||| ||||| || ||||| || | || || || |||| | || Sbjct 1148 AGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCG 1089 Query 5084 CGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAACAACAAACTTCTGAAATTAT 5143 ||||| ||||| | |||||||| | || |||| ||||| || ||| || ||||| Sbjct 1088 CGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTAT 1029 Query 5144 GCGGCAAATGCTTACTCAGGCTCAAACCTCAGGTCAACACTTTACAAATGACCAAATCCA 5203 ||| |||||||||||||| |||||||| | ||||| | ||||| |||||||||||| | Sbjct 1028 GCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTATTTTACCAATGACCAAATCAA 969 Query 5204 AGAACTTACTCGAAAGGTCGGCGCTGATATTGATGCTGTTCGTGCTAACACTGAACGTAC 5263 |||| | ||||| ||||| | ||||| |||| |||| | || | Sbjct 968 AGAAATGACTCGCAAGGTTAGTGCTGAGGTTGACTTAGTTC-----ATCA--------GC 922 Query 5264 ACATGTAGAAACGGACCGCTCTAAGCAGGAGGTCCAAAACTCTCGTTACGCTTCCTCACA 5323 | | | |||| | | || || | || || || Sbjct 921 AAACGCAGAATCAG-----------------------------CGGTATGGCTCTTCTCA 891 Query 5324 AGTCGGTAAAACCGCCAAGGATGTATCAAATGTCATTAGTGACGCATCTTCTGGTATTGT 5383 | || || || |||||| | || |||||| | | ||| || |||||||| | || Sbjct 890 TATTGGCGCTACTGCAAAGGATATTTCTAATGTCGTCACTGATGCTGCTTCTGGTGTGGT 831 Query 5384 TGATTATTTTCGTGGCGTTGATAAAGCTGTCGCGGATACTTGGAACAATTATTTCAAAGA 5443 |||| ||||| ||| ||||||||||||| || |||||||||||||||| | ||||| Sbjct 830 TGATATTTTTCATGGTATTGATAAAGCTGTTGCCGATACTTGGAACAATTTCTGGAAAGA 771 Query 5444 TGGCAAATCGGATGGGATAAGCTCAAA 5470 || ||| | ||||| || |||| || Sbjct 770 CGGTAAAGCTGATGGTATTGGCTCTAA 744 Score = 141 bits (156), Expect = 3e-30 Identities = 267/390 (68%), Gaps = 12/390 (3%) Strand=Plus/Minus Query 468 TAATCGAAGAGTTAGACGAATGCTACAACGTGCTCGGACAACTTGATATTAATAACACTA 527 |||| || || || | |||||||||| |||||| |||||||||||||||||||||| Sbjct 384 TAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTA 325 Query 528 TAGACCACAAACCTATCGGTAACGCCAAATGGGACTTAATGTATGAAAAACCTGTCTATA 587 |||||||| || || ||| |||||| ||| | | || || | || Sbjct 324 TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTT---- 269 Query 588 AACACTGGTATG-----AACTGGTATCAAAACGACCCCTTAAATCAATCAGAGAGGACTA 642 || | | | || | |||| | |||| || ||||| || | || || || Sbjct 268 -ACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTAAGGATATTCGCGATGAGTA 210 Query 643 CAACTATGCAAAGGCTAAGGGTACTAAAGATGAGTGCTCGAAAATCCTTGAGGAATCCAC 702 || || | || || |||| ||| |||||||| || | | | || |||| ||||| Sbjct 209 TAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCAC 150 Query 703 CATGAAATCCCGCCGTGGCTTTACCGTTCAGAGATTGATGAATGCTATGCGTACTGCCCA 762 |||||||| || | |||||| | ||||| | ||||||||||| ||||| || || Sbjct 149 TATGAAATCGCGTAGAGGCTTTGCTATTCAGCGTTTGATGAATGCAATGCGACAGGCTCA 90 Query 763 CACTGATGGCTGGTATGTTGTATTCGATACTCTCACCTTAGCTGATGATCGTATTA-AGG 821 ||||||| |||| | | || || || |||||||| || ||||| || || |||| ||| Sbjct 89 TGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCG-ATTAGAGG 31 Query 822 ACTTCTATGCTAACCCCAATGCTCTTCGTG 851 || |||| ||| ||||||||| | |||| Sbjct 30 CGTTTTATGATAATCCCAATGCTTTGCGTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17442292435755