Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aedes_20aegypti_20[genbank_20GCA_5F000004015.3_202014-04-30] 4,757 sequences; 1,383,974,186 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq4156 650 0.0 >seq4156 Length=4061 Score = 650 bits (720), Expect = 0.0 Identities = 984/1387 (71%), Gaps = 31/1387 (2%) Strand=Plus/Minus Query 2986 CGTAAAGGTGCCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGG 3045 |||||||| || || |||||||||||||| ||| || |||||||| | |||||| Sbjct 3697 CGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGG 3638 Query 3046 GGCTCT--TTAAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTG 3102 | | || |||| |||||| |||||||| | |||||| ||| || ||| Sbjct 3637 CCCCTTACTTGAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGC 3580 Query 3103 TTGACCTTTCTCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTC 3160 ||||||||| ||||||| ||| | ||| | || |||||||||| | | || |||| Sbjct 3579 ATGACCTTTCCCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTC 3522 Query 3161 ATGGACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCT 3220 | ||||| ||||| |||||||| ||||| ||| | || || ||||||||| | ||||| Sbjct 3521 AACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCT 3462 Query 3221 TTCTCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATAT 3280 |||||| |||||||||| | ||||||||||||| || || |||| ||||| ||| | Sbjct 3461 TTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGT 3402 Query 3281 TCCGCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGC 3340 || ||||| || ||||||||||| ||||||||| | || ||| ||||||||| |||| Sbjct 3401 CCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGC 3342 Query 3341 CGCACCACTCCCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTAC 3400 | | || ||||| | |||| |||||| ||| || | || | || | |||| || Sbjct 3341 CACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCAC 3282 Query 3401 TATTGTTCCTAAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTA 3460 ||| ||| | | ||| || |||||| |||| |||| |||| ||||||| || Sbjct 3281 GATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTA 3222 Query 3461 TAATAACTATTTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT-- 3518 ||| |||||||| ||||||||||||||||| ||||| || ||||| ||| ||| Sbjct 3221 TAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---AATGA 3165 Query 3519 --TTAGACCGTGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGT 3576 ||| | | |||||| |||| ||||| ||||||||||||||||| |||| |||||| Sbjct 3164 GCTTA-ATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGA 3106 Query 3577 CTGCTCCTCTTCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCA 3636 ||||||| |||||||| || ||| |||| || |||||| | | | || || | Sbjct 3105 CTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTA 3046 Query 3637 TTGATATTATGGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTT 3696 |||| ||||||||| |||| || |||||||| | | |||||||| || || ||| || Sbjct 3045 TTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATT 2986 Query 3697 ATTTCATGCAGCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATG 3756 | |||||||||||||| | ||||||||| || ||||| ||| |||||| ||||| | Sbjct 2985 ACTTCATGCAGCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACG 2926 Query 3757 CCGATAACCGACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTG 3816 | || ||||| || || ||||| |||| | | || ||||||| || || || || |||| Sbjct 2925 CTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTG 2866 Query 3817 ACGGTACCGACCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAAC 3876 | || || |||||| | || | || |||||||| ||||| || |||||||| | ||||| Sbjct 2865 ATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAAC 2806 Query 3877 ACTCAGTGCCTCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTC 3936 | || ||||| || ||||| || || |||||||| ||| | ||| | ||| |||| Sbjct 2805 ATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTC 2746 Query 3937 GCTTCCCGCCTATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTT 3996 | || ||||||| || ||| ||| || ||| | | | |||||||| Sbjct 2745 GTTTTCCGCCTACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTT 2686 Query 3997 ATACCGACCTTGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTT 4056 ||||||| |||| || ||||| | |||| ||| || |||||||| ||||| |||||| Sbjct 2685 ATACCGATATTGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTA 2626 Query 4057 ATCAGGATCTTTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCT 4116 ||||| |||||||| |||| | || | ||| ||||| |||| ||| | | Sbjct 2625 TGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGT 2566 Query 4117 GGTATCGTACTCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCG 4175 |||||||| | || |||||| || | ||||| | |||||||| || || Sbjct 2565 GGTATCGTTATGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCA 2507 Query 4176 TTCCTTGATGATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATT 4235 ||| || | || ||| || ||||||| | |||| || | || ||| Sbjct 2506 TTCATTCAGGAACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATT 2459 Query 4236 GACCATAATGACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAG 4295 ||| |||| ||| | ||||||||||| |||||| | |||||||||| |||| Sbjct 2458 CGCCACCATGATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAG 2399 Query 4296 GCTCGTTATAATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTATTATGACC 4355 | | | |||||| | |||||||| || | || || ||| ||||| || ||||| Sbjct 2398 GTTAAATTTAATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACT 2339 Query 4356 TCTTGAT 4362 || |||| Sbjct 2338 TCGTGAT 2332 Score = 174 bits (192), Expect = 6e-40 Identities = 226/307 (74%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 1376 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 1317 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGAGTCTTCCGC------TCAGAATCAACA 5582 |||||| |||||||||||| |||| || || || | ||| | |||||||| Sbjct 1316 TGCTGGTGCTGATGCTTCCTCTGCTGG--TATGGT-TGACGCCGGATTTGAGAATCAA-- 1262 Query 5583 AAAAGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGA 5641 |||||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 1261 -AAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGA 1203 Query 5642 ATAACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATT 5701 ||| | ||||||||||||||||||| || || || |||||||||||||| || Sbjct 1202 GACTCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACC 1144 Query 5702 CTGTTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTG 5761 || ||||| || |||||||||||| ||| | || ||||| || ||||||| Sbjct 1143 AGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTG 1084 Query 5762 CGTCCAT 5768 |||| || Sbjct 1083 CGTCTAT 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19384562555384