Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20maculatus_20[genbank_20GCA_5F002091835.1_202017-04-14] 50,590 sequences; 462,688,933 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq6040 95.1 5e-16 >seq6040 Length=4363 Score = 95.1 bits (104), Expect = 5e-16 Identities = 113/146 (77%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 5625 CGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTT-TACGGCACCT 5683 |||||| |||||||||||| |||||| ||||||||||||||||| || |||| || || Sbjct 288 CGTCAACTGCTAAATCGGGGGATCCCTTCAGGGTTCCGATTTAGTGGTTGTACGACA-CT 346 Query 5684 CGACCCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTG-ATAGA 5742 | || | || | | ||||||||||||||| | ||| |||||||||||| | || Sbjct 347 C--CCTATTCATCCTAGTTATGGGTGATGGTTCACATGGTGAGCCATCGCCCTGTAAAGC 404 Query 5743 CGGTTTT-TCGCCCTTTGA--CGTTG 5765 ||||||| | ||||| || ||||| Sbjct 405 CGGTTTTAACCCCCTTCGAGGCGTTG 430 Score = 95.1 bits (104), Expect = 5e-16 Identities = 113/146 (77%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 5625 CGTCAAGCTCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTT-TACGGCACCT 5683 |||||| |||||||||||| |||||| ||||||||||||||||| || |||| || || Sbjct 2438 CGTCAACTGCTAAATCGGGGGATCCCTTCAGGGTTCCGATTTAGTGGTTGTACGACA-CT 2496 Query 5684 CGACCCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTG-ATAGA 5742 | || | || | | ||||||||||||||| | ||| |||||||||||| | || Sbjct 2497 C--CCTATTCATCCTAGTTATGGGTGATGGTTCACATGGTGAGCCATCGCCCTGTAAAGC 2554 Query 5743 CGGTTTT-TCGCCCTTTGA--CGTTG 5765 ||||||| | ||||| || ||||| Sbjct 2555 CGGTTTTAACCCCCTTCGAGGCGTTG 2580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20375596879960