Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001741.1 Length=4877 Score E Sequences producing significant alignments: (Bits) Value seq87144 87.8 6e-14 >seq87144 Length=4065 Score = 87.8 bits (96), Expect = 6e-14 Identities = 196/291 (67%), Gaps = 5/291 (2%) Strand=Plus/Plus Query 1073 TTCTGCGGTTAATGATGTGCCTTTTGGTTATCAAGAGCGTTATGCTGAGTATCGTTATAA 1132 |||||| | | | ||||| ||| || |||||||| || ||||| || ||||||||||| Sbjct 2507 TTCTGCTGATGACGATGT---TTTCGGCTATCAAGAACGATATGCAGAATATCGTTATAA 2563 Query 1133 GCCTTCGAAGGTTACTGGATTATTTAGATCTAACGCTACAGGTACTCTAGATTCTTGGCA 1192 ||||| | ||||| | | ||| ||||||| ||| | | | | || ||| ||||||| Sbjct 2564 ACCTTCCATCATTACTTCACTCTTTCGATCTAATGCTGCTGCTTCACTCGATGCTTGGCA 2623 Query 1193 TTTGTCTCAGAATTTTGCGAATTTACCTACTTTGAATGAGACTTTTATTCAGAGTAATAC 1252 ||| || || | || ||| | | ||| || | |||| | |||||| | |||| | Sbjct 2624 TTTATCCCAAGACTTCGCGGCTCTCCCTGCTCTCAATGCTTCATTTATTGAAGATAATCC 2683 Query 1253 GCCGATAGATAGAGCGTTAGCAGTTCCTGATCAGCCTGATTTTATTTGTGACTTTTAC-T 1311 || | ||| | | || ||||| | | || | ||||| | || | | || | Sbjct 2684 ACCTGTCGATCGTATTGTCGCGGTTCCAACTGAACCCCAATTTATCTTCGATTCTCACAT 2743 Query 1312 TTAATTATCGTTGTATTAGGCCTATGCCGGTGTATTCTGTTCCAGGTTTAA 1362 | |||| || ||| | | || ||||| ||||| || || || || |||| Sbjct 2744 GTCATTA-CGATGTGTCCGTCCAATGCCTGTGTACTCAGTACCCGGCTTAA 2793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15445488246480