Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001998.1 Length=4529 Score E Sequences producing significant alignments: (Bits) Value seq87144 174 5e-40 >seq87144 Length=4065 Score = 174 bits (192), Expect = 5e-40 Identities = 497/768 (65%), Gaps = 36/768 (5%) Strand=Plus/Plus Query 1053 CTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCTCGTGGTGGAACAAGG 1112 ||||| |||| |||||| | ||| || | || | || || ||||| || || | Sbjct 2073 CTTCGACAAGCGTTCCAAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGA 2132 Query 1113 TACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGT 1172 || || ||| ||||| || |||||| ||| ||||| || ||| | || ||||| Sbjct 2133 TATATCGAGCTTATTAAATCTCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGC 2192 Query 1173 GCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCC 1232 |||| || ||||| ||| |||||||| ||||| ||| | ||| | |||| || Sbjct 2193 CCAGAATACCTTGGCGGTGGCTCAACTCCGGTGAACATTACACCGGTAACACAACAATCT 2252 Query 1233 TCAACAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCG 1292 | || || | || | || || || |||||||| |||| |||||||| | | Sbjct 2253 GCTACTGATGCAACCACCCCACAGGGTAATCTTGCAGCTTTCGGTACAGCCAATCTTCAT 2312 Query 1293 AAGCGAGTCTTCACAAAGTCTTTCACAGAGCATGGTGTAATTCTTGGATTAGCCTCTGTA 1352 || | | ||| ||||| || ||||| || || || | || | || | | ||| || Sbjct 2313 AATCATGGCTTTACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTT 2372 Query 1353 CGTGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGG 1412 ||||| || || | ||||| ||||| | | | |||| || || || || |||| Sbjct 2373 CGTGCAGACCTAACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTAC 2432 Query 1413 GACTTTTATTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATT 1472 ||||| |||||||||||||| || | || || ||| | | || || ||||| || Sbjct 2433 GACTTCTATTGGCCTGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATC 2492 Query 1473 TATTGCCAAGGTCCTGCAGTTAAGGATGCTCAGAATGGTAATGTTGTTGTGGATGAGCAA 1532 | ||||| |||||| | || | ||||| | Sbjct 2493 T-TTGCC--------------------------GATGGTACTTCTGCT---GATGACGAT 2522 Query 1533 GTCTTTGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATTACTGGG 1592 || || || ||||| || ||| ||| || ||||| ||||| |||| | |||||| Sbjct 2523 GTTTTCGGCTATCAAGAACGATATGCAGAATATCGTTATAAACCTTCCATCATTACTTCA 2582 Query 1593 AAGTTCCGATCAAATGCTACAGGTTCTTTAGATGCATGGCATTTAGCTCAGCAGTTTGAG 1652 || ||||| |||||| | | ||| | ||||| ||||||||| | || | || | | Sbjct 2583 CTCTTTCGATCTAATGCTGCTGCTTCACTCGATGCTTGGCATTTATCCCAAGACTTCGCG 2642 Query 1653 AATCTTCCAACACT---TTCTCCAGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTT 1709 ||| || | || | || || ||||| ||||| ||||| ||| | |||||| || Sbjct 2643 GCTCTCCCTGCTCTCAATGCTTCA---TTTATTGAAGATAATCCACCTGTCGATCGTATT 2699 Query 1710 GTTGCTGTAGATACTGAGCCAGATTTTCTCTTAGATGGTTGGTTTTCATTGCGTTGTGCA 1769 || || || ||||| || | ||| |||| ||| | | ||||| || |||| Sbjct 2700 GTCGCGGTTCCAACTGAACCCCAATTTATCTTCGATTCTCACATGTCATTACGATGTGTC 2759 Query 1770 AGACCAATGCCTGTCTATTCTGTTCCAGGCCTCATTGATCATTTCTAA 1817 | ||||||||||| || || || || ||| | || |||||||||||| Sbjct 2760 CGTCCAATGCCTGTGTACTCAGTACCCGGCTTAATCGATCATTTCTAA 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14335403589360