Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002180.1 Length=4532 Score E Sequences producing significant alignments: (Bits) Value seq87144 168 2e-38 seq61792 80.6 8e-12 >seq87144 Length=4065 Score = 168 bits (186), Expect = 2e-38 Identities = 496/768 (65%), Gaps = 36/768 (5%) Strand=Plus/Plus Query 1052 CTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCTCGTGGCGGAACAAGG 1111 ||||| |||| |||||| | ||| || | || | || || |||||||| || | Sbjct 2073 CTTCGACAAGCGTTCCAAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGA 2132 Query 1112 TACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGT 1171 || || ||| ||||| || |||||| ||| ||||| || ||| | || ||||| Sbjct 2133 TATATCGAGCTTATTAAATCTCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGC 2192 Query 1172 GCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCC 1231 |||| || ||||| ||| |||||||| ||||| ||| | ||| | |||| || Sbjct 2193 CCAGAATACCTTGGCGGTGGCTCAACTCCGGTGAACATTACACCGGTAACACAACAATCT 2252 Query 1232 TCAACAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCG 1291 | || || | || | || || || |||||||| |||| |||||||| | | Sbjct 2253 GCTACTGATGCAACCACCCCACAGGGTAATCTTGCAGCTTTCGGTACAGCCAATCTTCAT 2312 Query 1292 AAGCGAGTCTTCACAAAGTCTTTCACAGAACATGGTGTAATTCTTGGATTAGCCTCTGTA 1351 || | | ||| ||||| || ||||| ||||| || | || | || | | ||| || Sbjct 2313 AATCATGGCTTTACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTT 2372 Query 1352 CGCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGG 1411 || || || || | ||||| ||||| | | | |||| || || || || |||| Sbjct 2373 CGTGCAGACCTAACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTAC 2432 Query 1412 GACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATC 1471 ||||| || ||||||||||| || | || || ||| | | || || ||||| ||| Sbjct 2433 GACTTCTATTGGCCTGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATC 2492 Query 1472 TATTGCCAAGGTCCTGCAGTTAAGGATGCTCAGAATGGTAATGTTGTTGTGGATGAGCAA 1531 | ||||| |||||| | || | ||||| | Sbjct 2493 T-TTGCC--------------------------GATGGTACTTCTGCT---GATGACGAT 2522 Query 1532 GTCTTTGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATCACTGGG 1591 || || || ||||| || ||| ||| || ||||| ||||| |||| | || ||| Sbjct 2523 GTTTTCGGCTATCAAGAACGATATGCAGAATATCGTTATAAACCTTCCATCATTACTTCA 2582 Query 1592 AAGTTCCGATCAAATGCTACAGGTTCTTTAGATGCATGGCATTTAGCTCAGCAGTTTGAG 1651 || ||||| |||||| | | ||| | ||||| ||||||||| | || | || | | Sbjct 2583 CTCTTTCGATCTAATGCTGCTGCTTCACTCGATGCTTGGCATTTATCCCAAGACTTCGCG 2642 Query 1652 AATCTTCCAACACT---TTCTCCAGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTT 1708 ||| || | || | || || ||||| ||||| ||||| ||| | |||||| || Sbjct 2643 GCTCTCCCTGCTCTCAATGCTTCA---TTTATTGAAGATAATCCACCTGTCGATCGTATT 2699 Query 1709 GTTGCTGTAGATACTGAGCCAGATTTTCTCTTAGATGGTTGGTTTTCATTGCGTTGTGCA 1768 || || || ||||| || | ||| |||| ||| | | ||||| || |||| Sbjct 2700 GTCGCGGTTCCAACTGAACCCCAATTTATCTTCGATTCTCACATGTCATTACGATGTGTC 2759 Query 1769 AGACCAATGCCTGTCTATTCTGTTCCAGGTCTTATTGATCATTTCTAA 1816 | ||||||||||| || || || || || | || |||||||||||| Sbjct 2760 CGTCCAATGCCTGTGTACTCAGTACCCGGCTTAATCGATCATTTCTAA 2807 >seq61792 Length=4143 Score = 80.6 bits (88), Expect = 8e-12 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 2067 GAGAGCAAATGGCTTTTCAGGAGCGCATGTCTAACACGGCATACCAACGTGCTATGGAAG 2126 ||||||||||||| ||||| || | |||||||||| ||||| ||||| || ||| ||| Sbjct 2864 GAGAGCAAATGGCGTTTCAAGAAAGAATGTCTAACAGCGCATATCAACGCGCAATGAAAG 2923 Query 2127 ACATGAAGAAAGCTGGCCTTAACCCTATGTTAGC 2160 ||||||| ||| || || ||||| || |||| Sbjct 2924 ACATGAAATTAGCAGGACTAAACCCAATACTAGC 2957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14344973284680