Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002194.1 Length=4563 Score E Sequences producing significant alignments: (Bits) Value seq87144 163 8e-37 seq129457 98.7 3e-17 seq61792 91.5 4e-15 >seq87144 Length=4065 Score = 163 bits (180), Expect = 8e-37 Identities = 490/760 (64%), Gaps = 26/760 (3%) Strand=Plus/Plus Query 940 CTTCGTGAAGCCTTCCAATTGCAAAAGCTTTATGAAAGAGATGCTCGTGGTGGAACAAGG 999 ||||| |||| |||||| | ||| || | ||| | || || ||||| || || | Sbjct 2073 CTTCGACAAGCGTTCCAAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGA 2132 Query 1000 TACATTGAGATTATCCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGT 1059 || || ||| |||| || |||||| ||| ||||| || ||| | || ||||| Sbjct 2133 TATATCGAGCTTATTAAATCTCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGC 2192 Query 1060 GCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCC 1119 |||| || ||||| ||| |||||||| ||||| ||| | ||| | |||| || Sbjct 2193 CCAGAATACCTTGGCGGTGGCTCAACTCCGGTGAACATTACACCGGTAACACAACAATCT 2252 Query 1120 TCAACAGACTCTACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCG 1179 | || || | || | || || || |||||||| |||| |||||||| | | Sbjct 2253 GCTACTGATGCAACCACCCCACAGGGTAATCTTGCAGCTTTCGGTACAGCCAATCTTCAT 2312 Query 1180 AAGCGAGTTTTCACAAAGTCTTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTGTA 1239 || | | || ||||| || ||||| ||||| || | || | || | | ||| || Sbjct 2313 AATCATGGCTTTACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTT 2372 Query 1240 CGCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACACGCTGG 1299 || || || || | ||||| ||||| | | | |||| || || || || |||| Sbjct 2373 CGTGCAGACCTAACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTAC 2432 Query 1300 GACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATC 1359 ||||| || ||||||||||| || | || || ||| | | || || ||||| ||| Sbjct 2433 GACTTCTATTGGCCTGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATC 2492 Query 1360 TATTGTC-AAGGTCCTTCAGTTAAAAATTCTGGAGGAGAGATTGTGGATGACCAAGTCTT 1418 | ||| | | ||| |||| || |||||| | || || Sbjct 2493 T-TTGCCGATGGTACTTC------------------------TGCTGATGACGATGTTTT 2527 Query 1419 TGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATTACCGGCAAGTT 1478 || ||||| || ||| ||| || ||||| ||||| |||| | ||||| || Sbjct 2528 CGGCTATCAAGAACGATATGCAGAATATCGTTATAAACCTTCCATCATTACTTCACTCTT 2587 Query 1479 CCGATCAAATGCTACAAGTTCTTTAGATTCATGGCATTTAGCTCAGGAATTTGAGAATCT 1538 ||||| |||||| | ||| | ||| | ||||||||| | || || || | | ||| Sbjct 2588 TCGATCTAATGCTGCTGCTTCACTCGATGCTTGGCATTTATCCCAAGACTTCGCGGCTCT 2647 Query 1539 TCCAACACTTTCTCCGGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTCTTGCTGT 1598 || | || | | ||||| ||||| ||||| ||| | |||||| || | || || Sbjct 2648 CCCTGCTCTCAATGCTTCATTTATTGAAGATAATCCACCTGTCGATCGTATTGTCGCGGT 2707 Query 1599 AAGTACTGAGCCAGATTTTCTTTTAGATGGTTGGTTTTCATTGCGTTGCGCAAGACCAAT 1658 ||||| || | ||| | || ||| | | ||||| || || | | ||||| Sbjct 2708 TCCAACTGAACCCCAATTTATCTTCGATTCTCACATGTCATTACGATGTGTCCGTCCAAT 2767 Query 1659 GCCTGTTTACTCTGTCCCAGGCTTCATTGATCATTTCTAA 1698 |||||| ||||| || || ||||| || |||||||||||| Sbjct 2768 GCCTGTGTACTCAGTACCCGGCTTAATCGATCATTTCTAA 2807 >seq129457 Length=619 Score = 98.7 bits (108), Expect = 3e-17 Identities = 215/320 (67%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 190 TTAGCACGTATGGCAACGCCTATCTTTCCTCTTATGGATAATTTGCGTTTAGATACGCAG 249 || |||||| | || || || || ||| | ||||||||| | | | |||||||| Sbjct 597 TTTGCACGTCTTGCCACACCCATAAATCCCATCATGGATAATCTATATATGGATACGCAC 538 Query 250 TATTTCTTTGTTCCTCTTCGACTGTTATGGTCGAATTTCCAAAAGTTCTGTGGAGAACAA 309 | ||||| ||| || | || || ||||| |||| ||||| ||| ||| |||||| Sbjct 537 TTTTTCTCTGTGCCGATCCGTCTACTATGGGACAATTGGCAAAAATTCAATGGTGAACAA 478 Query 310 GATAATCCTGATGATTCTACAGATT--TTCTTACCCCCATTTTAACCGCTCCTGCTGGGG 367 |||| | ||||| | || | || |||| || | || ||||||||||| | Sbjct 477 ATCGATCCCGGCGATTCCATTGACTACTTAATACCTACAATC--ACAGCTCCTGCTGGCG 420 Query 368 GATTTACTGAAGGATCGATCCATGATTATCTTGGTCTACCTACTAAAGTTGCTGGAGTTC 427 | | | ||||| || || |||||| |||| |||| |||||||| ||||| || Sbjct 419 GCTACGCAGAAGGCTCTATGTTTGATTACTTTGGCATACCGACTAAAGTCGCTGGCCTTG 360 Query 428 AATGTGTTGCGTTCTGGCACAGAGCTTACAATTTGATTTGGAACCAGTACTATCGCGACG 487 || ||| | ||| ||||||| |||||| | | |||||| | | | || |||| Sbjct 359 AACACTCTGCCCTTTGGAACAGAGCCTACAATCTTGTCTGGAACGAATGGTTCCGTGACG 300 Query 488 AAAACATTCAGGAATCTGTT 507 ||||| | || || ||| || Sbjct 299 AAAACCTACAAGACTCTCTT 280 >seq61792 Length=4143 Score = 91.5 bits (100), Expect = 4e-15 Identities = 196/291 (67%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 1090 GTGAATATTTCTCCGATTCCACAGACTTCCTCAACAGACTCTACATCTCCTCAAGGAAAT 1149 |||||||| || || || |||| || || ||||| || | ||| || ||||| ||| Sbjct 2174 GTGAATATATCACCAATAGCACAAACATCATCAACCGATACAACAAGCCCACAAGGCAAT 2233 Query 1150 CTTGCTGCTTATGGTACAGCGA--TTGGATCGAAGCGAGTTTTCACAAAGTCTTTCACAG 1207 || | || || |||| | || |||| || || ||| || |||| ||||||| Sbjct 2234 CTCTCAGCAATGGGAACAGTAACATTAGATCAAATCGGATTTACAAAAAGC--TTCACAG 2291 Query 1208 AACATGGTGTAATCCTTGGATTAGCCTCTGTACGCGCCGATCTCAACTATCAGCAAGGTT 1267 ||||| ||| | | | | | |||||||| || || | || || ||||| Sbjct 2292 AACATTCAACAATATTATGCCTGGTCAACGTACGCGCTGACCTAACATACCAACAAGGCA 2351 Query 1268 TGGATAGGATGTGGTCACGAAGAACACGCTGGGACTTTTACTGGCCTGCTCTTAGCCATT 1327 || | || |||||| || |||||||| || ||||||||||| || ||| | || Sbjct 2352 TGAACAGAATGTGGAGCAGACAAACACGCTACGATTTTTACTGGCCCGCACTTGCCAATA 2411 Query 1328 TAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTATTGTCAAGGTCCTTCAG 1378 | || || ||| | || ||||| ||||| || || | ||||||| | |||| Sbjct 2412 TCGGCGAACAATCAGTACTCAACAAAGAAATATACTTTCAAGGTACGTCAG 2462 Score = 80.6 bits (88), Expect = 8e-12 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 1949 GAGAGCAAATGGCTTTTCAGGAGCGCATGTCTAACACGGCATACCAACGTGCTATGGAAG 2008 ||||||||||||| ||||| || | |||||||||| ||||| ||||| || ||| ||| Sbjct 2864 GAGAGCAAATGGCGTTTCAAGAAAGAATGTCTAACAGCGCATATCAACGCGCAATGAAAG 2923 Query 2009 ACATGAAGAAAGCTGGCCTTAACCCTATGTTAGC 2042 ||||||| ||| || || ||||| || |||| Sbjct 2924 ACATGAAATTAGCAGGACTAAACCCAATACTAGC 2957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14443860136320