Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_002643.1 Length=4594 Score E Sequences producing significant alignments: (Bits) Value seq129457 100 8e-18 seq207554 84.2 6e-13 >seq129457 Length=619 Score = 100 bits (110), Expect = 8e-18 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 258 CCGACTAGTATGGGACAACTGGGAAAAATTCAACGGAGCACAAGACAACCCATCGGACTC 317 ||| ||| |||||||||| ||| |||||||||| || | |||| | | || || || Sbjct 520 CCGTCTACTATGGGACAATTGGCAAAAATTCAATGGTGAACAAATCGATCCCGGCGATTC 461 Query 318 AACGGACTATTTGATCCCAACAATCACAGCACCCGCTGGTGGCTTCGAAAACATGTCCAT 377 | ||||| || || || ||||||||||| || ||||| |||| || | | || || Sbjct 460 CATTGACTACTTAATACCTACAATCACAGCTCCTGCTGGCGGCTACGCAGAAGGCTCTAT 401 Query 378 CTACGATCACTTCGGAATTCCGACACAAGTTGCAAATCTCGAGATAAATGCTCTACCTTT 437 | ||| |||| || || ||||| |||| | || | | || |||| || || Sbjct 400 GTTTGATTACTTTGGCATACCGACTAAAGTCG-----CTGGCCTTGAACACTCTGCCCTT 346 Query 438 -----CAGAGCTTACAATCTTATCTATAACGACTGGTTCCGAGACCAAAATCT 485 |||||| ||||||||| ||| ||||| |||||||| ||| |||| || Sbjct 345 TGGAACAGAGCCTACAATCTTGTCTGGAACGAATGGTTCCGTGACGAAAACCT 293 >seq207554 Length=4125 Score = 84.2 bits (92), Expect = 6e-13 Identities = 114/158 (72%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 1249 CTCGGTGAACAAGCTATCCTTAACAAAGAAATCTACGCACAAGGAAATGCTACCGACTCG 1308 || || ||||| | || ||||| |||||||| ||||| ||||||| | ||||| Sbjct 1921 CTTGGAGAACAGTCAATTCTTAATAAAGAAATTTACGCCCAAGGAACAACAGCCGACGAT 1862 Query 1309 GAAATCTTCGGCTATCAAGAAAGATACGGTGAATACCGCTTCCGTCCA---TCTGAAATT 1365 | | ||||||||||||||||| |||| ||| ||||||| | ||| | || | Sbjct 1861 TCAGTATTCGGCTATCAAGAAAGGTACGCTGAGTACCGCTACAAACCAAGCTTTG---TA 1805 Query 1366 AAAGGACAATTCCGCTCTAACTTCGCTGAAAGCTTAGA 1403 | ||||||| | || || || ||||| |||||||||| Sbjct 1804 ACAGGACAAATGCGATCAAATTTCGCACAAAGCTTAGA 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14542746987960