Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_007461.1 Length=4530 Score E Sequences producing significant alignments: (Bits) Value seq87144 161 3e-36 seq61792 80.6 8e-12 >seq87144 Length=4065 Score = 161 bits (178), Expect = 3e-36 Identities = 493/766 (64%), Gaps = 32/766 (4%) Strand=Plus/Plus Query 901 CTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCCCGTGGTGGAACAAGG 960 ||||| |||| |||||| | ||| || | || | || |||||||| || || | Sbjct 2073 CTTCGACAAGCGTTCCAAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGA 2132 Query 961 TACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGT 1020 || || ||| ||||| || |||||| ||| ||||| || ||| | || ||||| Sbjct 2133 TATATCGAGCTTATTAAATCTCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGC 2192 Query 1021 GCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCC 1080 |||| || ||||| ||| |||||||| ||||| ||| | ||| | |||| || Sbjct 2193 CCAGAATACCTTGGCGGTGGCTCAACTCCGGTGAACATTACACCGGTAACACAACAATCT 2252 Query 1081 TCAACAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCG 1140 | || || | || | || || || |||||||| |||| |||||||| | | Sbjct 2253 GCTACTGATGCAACCACCCCACAGGGTAATCTTGCAGCTTTCGGTACAGCCAATCTTCAT 2312 Query 1141 AAGCGAGTCTTCACAAAGTCCTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTGTA 1200 || | | ||| ||||| || ||||| ||||| || | || | || | | ||| || Sbjct 2313 AATCATGGCTTTACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTT 2372 Query 1201 CGCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGG 1260 || || || || | ||||| ||||| | | | |||| || || || || |||| Sbjct 2373 CGTGCAGACCTAACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTAC 2432 Query 1261 GACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATC 1320 ||||| || ||||||||||| || | || || ||| | | || || ||||| ||| Sbjct 2433 GACTTCTATTGGCCTGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATC 2492 Query 1321 TATTGCC-AAGGTCCTGCAGTTAAGGATGCTCAGAATGGCAATGTTGTTGTGGATGAGCA 1379 | ||||| | ||| || | |||| ||||| | Sbjct 2493 T-TTGCCGATGGTACTTC---------TGCT---------------------GATGACGA 2521 Query 1380 AGTCTTTGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATTACTGG 1439 || || || ||||| || ||| ||| || ||||| ||||| |||| | |||||| Sbjct 2522 TGTTTTCGGCTATCAAGAACGATATGCAGAATATCGTTATAAACCTTCCATCATTACTTC 2581 Query 1440 CAAGTTCCGATCAAATGCTACAAGTTCTTTAGATTCATGGCATTTAGCTCAGGAATTTGA 1499 || ||||| |||||| | ||| | ||| | ||||||||| | || || || | Sbjct 2582 ACTCTTTCGATCTAATGCTGCTGCTTCACTCGATGCTTGGCATTTATCCCAAGACTTCGC 2641 Query 1500 GAATCTTCCAACACTTTCTCCGGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTCT 1559 | ||| || | || | | ||||| ||||| ||||| ||| | |||||| || | Sbjct 2642 GGCTCTCCCTGCTCTCAATGCTTCATTTATTGAAGATAATCCACCTGTCGATCGTATTGT 2701 Query 1560 TGCTGTAAATACTGAGCCAGATTTTCTTTTAGATGGCTGGTTTTCATTGCGTTGTGCAAG 1619 || || ||||| || | ||| | || ||| | ||||| || |||| | Sbjct 2702 CGCGGTTCCAACTGAACCCCAATTTATCTTCGATTCTCACATGTCATTACGATGTGTCCG 2761 Query 1620 ACCAATGCCTGTCTACTCTGTTCCAGGCCTCATTGATCATTTCTAA 1665 ||||||||||| ||||| || || ||| | || |||||||||||| Sbjct 2762 TCCAATGCCTGTGTACTCAGTACCCGGCTTAATCGATCATTTCTAA 2807 >seq61792 Length=4143 Score = 80.6 bits (88), Expect = 8e-12 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 1916 GAGAGCAAATGGCTTTTCAGGAGCGCATGTCTAACACGGCATACCAACGTGCCATGGAAG 1975 ||||||||||||| ||||| || | |||||||||| ||||| ||||| || ||| ||| Sbjct 2864 GAGAGCAAATGGCGTTTCAAGAAAGAATGTCTAACAGCGCATATCAACGCGCAATGAAAG 2923 Query 1976 ACATGAAGAAAGCTGGCCTTAACCCTATGTTAGC 2009 ||||||| ||| || || ||||| || |||| Sbjct 2924 ACATGAAATTAGCAGGACTAAACCCAATACTAGC 2957 Score = 78.8 bits (86), Expect = 3e-11 Identities = 189/284 (67%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 1051 GTGAATATTTCTCCGATTCCACAGACTTCCTCAACAGACTCCACATCTCCTCAAGGAAAT 1110 |||||||| || || || |||| || || ||||| || | ||| || ||||| ||| Sbjct 2174 GTGAATATATCACCAATAGCACAAACATCATCAACCGATACAACAAGCCCACAAGGCAAT 2233 Query 1111 CTTGCTGCTTATGGTACAGCGA--TTGGATCGAAGCGAGTCTTCACAAAGTCCTTCACAG 1168 || | || || |||| | || |||| || || | | || |||| |||||||| Sbjct 2234 CTCTCAGCAATGGGAACAGTAACATTAGATCAAATCGGATTTACAAAAAG--CTTCACAG 2291 Query 1169 AACATGGTGTAATCCTTGGATTAGCCTCTGTACGCGCCGATCTCAACTATCAGCAAGGTT 1228 ||||| ||| | | | | | |||||||| || || | || || ||||| Sbjct 2292 AACATTCAACAATATTATGCCTGGTCAACGTACGCGCTGACCTAACATACCAACAAGGCA 2351 Query 1229 TGGATAGGATGTGGTCACGAAGAACGCGCTGGGACTTTTACTGGCCTGCTCTTAGCCATT 1288 || | || |||||| || ||| |||| || ||||||||||| || ||| | || Sbjct 2352 TGAACAGAATGTGGAGCAGACAAACACGCTACGATTTTTACTGGCCCGCACTTGCCAATA 2411 Query 1289 TAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTATTGCCAAGGT 1332 | || || ||| | || ||||| ||||| || || | |||||| Sbjct 2412 TCGGCGAACAATCAGTACTCAACAAAGAAATATACTTTCAAGGT 2455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14338593487800