Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021797.1 Length=6453 Score E Sequences producing significant alignments: (Bits) Value seq273732 118 4e-23 >seq273732 Length=1044 Score = 118 bits (130), Expect = 4e-23 Identities = 218/320 (68%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 3438 AAAATTTGGGTGTTGATTTGGTGGTATAAAAACCTTAACGGATATGGCAACATATCCGTT 3497 ||||||||| | || || ||| |||||| |||| || || || | || ||| Sbjct 180 AAAATTTGGTTTTTAATATGGATTATTAAAAATTTTAAAGGTTACTCAAATGTTTCAGTT 239 Query 3498 AAATTACTGTACAGTCAAGCATGGCACGAAACGGGGAACTTTAAAAGTCCAGTATATGAA 3557 || ||| || || || ||||| |||||||| | ||| || | ||| || Sbjct 240 AAGACACTATATGCGCAGGCTTGGCATGAAACGGGTGATTTTTCTAGCCAAGTTTACACG 299 Query 3558 CAAAATAAAAACCTCTTTGGGATGCGTCACCCGTCGAAACGTAAAACGTTATCGCTTGGC 3617 ||||||||||||| ||||| ||||||||||||||| ||||||||||| || | || Sbjct 300 GAAAATAAAAACCTTTTTGGAATGCGTCACCCGTCGGTACGTAAAACGTATTCTTTGGGT 359 Query 3618 TCAAATTTATCTCACGCTAGGTATAAAAGTCATAAAGATTCTATTGTCGATTATTTCTAT 3677 ||| |||||| | |||||||||| | ||||||| |||||||||| | Sbjct 360 TCACGACACGGTCACGCCTATTTTAAAAGTCATTATCATTCTATACTCGATTATTTTGAA 419 Query 3678 AGGCAACAAAATTTTAGAATTGCTAACGTTAGTGATGAACAATATATGGAAGCAACCGTA 3737 |||||| |||||| ||| |||| ||| || ||||||||||| |||| || Sbjct 420 AGGCAAAGCTATTTTAATATTCCTAATTCCCAAGATCAAGAATATATGGAATCAACTGTC 479 Query 3738 AAAAGTAATTATGCGGAGGA 3757 |||||||| || || || Sbjct 480 GCTAGTAATTACGCCGAAGA 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20467726240608