Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_021805.1 Length=6478 Score E Sequences producing significant alignments: (Bits) Value seq273732 111 6e-21 seq2673 84.2 9e-13 >seq273732 Length=1044 Score = 111 bits (122), Expect = 6e-21 Identities = 223/331 (67%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 3454 TAACAAAGCTTAAGATTTGGGTGTTGATTTGGTGGTATAAAAACCTTAACGGATATGGTA 3513 |||| || | || |||||| | || || ||| |||||| |||| || || | Sbjct 169 TAACGAAAATCAAAATTTGGTTTTTAATATGGATTATTAAAAATTTTAAAGGTTACTCAA 228 Query 3514 ACATCTCCGTTAAATTACTGTACAGTCAAGCATGGCACGAAACGGGGAATTTCAAAAGTG 3573 | | || ||||| ||| || || || ||||| |||||||| |||| || Sbjct 229 ATGTTTCAGTTAAGACACTATATGCGCAGGCTTGGCATGAAACGGGTGATTTTTCTAGCC 288 Query 3574 CAGTATATGAAGAAAATAAAAACCTCTTTGGGATGCGTCACCCGTCGAAACGTAAAACGT 3633 ||| || |||||||||||||| ||||| ||||||||||||||| ||||||||||| Sbjct 289 AAGTTTACACGGAAAATAAAAACCTTTTTGGAATGCGTCACCCGTCGGTACGTAAAACGT 348 Query 3634 TATCGCTTGGCTCAAATTTATCTCACGCTAGGTATAAAAATCATAAAGATTCTATTATCG 3693 || | || ||| |||||| | ||||| |||| | ||||||| ||| Sbjct 349 ATTCTTTGGGTTCACGACACGGTCACGCCTATTTTAAAAGTCATTATCATTCTATACTCG 408 Query 3694 ATTATTTCTATAGGCAGCAAAATTTTAGAATTGCTAACGTTAGTGATGAACAATATATGG 3753 ||||||| | ||||| |||||| ||| |||| ||| || ||||||||| Sbjct 409 ATTATTTTGAAAGGCAAAGCTATTTTAATATTCCTAATTCCCAAGATCAAGAATATATGG 468 Query 3754 AAGCAACCGTGAAAAGTAATTATGCGGAAGA 3784 || |||| || |||||||| || ||||| Sbjct 469 AATCAACTGTCGCTAGTAATTACGCCGAAGA 499 >seq2673 Length=6299 Score = 84.2 bits (92), Expect = 9e-13 Identities = 92/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 2381 AATTACTAAGGTTATGGGATTTTTCAAAAATATTTTTAAGAAGAAAAAAGGTGGTACATT 2440 || |||||| |||||||||||||||||| | ||||||||||||||||| |||||||| Sbjct 1376 AAGTACTAA---TATGGGATTTTTCAAAAAGTTATTTAAGAAGAAAAAAGGCGGTACATT 1320 Query 2441 TTTAGGAAATATGATTCGTGGCGTATCTTCGTCTGCTACGGGTGGTATCTTAGGAAGTGG 2500 ||| || ||| | || | || ||| | ||| | |||||||| | |||| ||| Sbjct 1319 TTTCGGTAATCTTATCAGAGGTGTAGCGAATAAAGCTTCTGGTGGTATACTCGGAAATGG 1260 Query 2501 TG 2502 || Sbjct 1259 TG 1258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20547466486208