Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_022790.1 Length=4129 Score E Sequences producing significant alignments: (Bits) Value seq287328 325 1e-85 seq207554 197 4e-47 seq61792 196 1e-46 seq61791 179 1e-41 seq87144 123 7e-25 >seq287328 Length=640 Score = 325 bits (360), Expect = 1e-85 Identities = 262/316 (83%), Gaps = 1/316 (0%) Strand=Plus/Plus Query 2219 TATGACGACTAAAAGAAAAGCCACTGGCGTACCTAAAAACACATTTCGTTCAGCCTATAA 2278 |||||| || |||||||||||||| ||| |||| ||||| ||||||||||||||||| || Sbjct 326 TATGACAACCAAAAGAAAAGCCACAGGCATACCAAAAAATACATTTCGTTCAGCCTACAA 385 Query 2279 TTTAGGCAACGAAGATTACAGTGAAACGTTTAATGACGGTATCACTGAACAACATCACAC 2338 ||||||||||||||| || || || | |||| ||| || | || |||||||||||||| Sbjct 386 TTTAGGCAACGAAGACTATAGCCAATCATTTACTGATGGCTTAACAGAACAACATCACAC 445 Query 2339 AGATCAGTGTGATATTAACAAGATATTAGCACAATTCATGGAAACAGGAATTATGCCACA 2398 ||| |||||||||||||||||| | |||||||| ||||||||||||| ||||| Sbjct 446 AGACACGTGTGATATTAACAAGATCCTGGCACAATTTATGGAAACAGGAA-NNTGCCAGG 504 Query 2399 AACTAACGCAAACCCACAATACGGAGACGTATCGGAAGTGGATTTTCAAGAAATGCAAAA 2458 || || |||||||||||||| ||||||||||| || || || ||| | |||||||||| Sbjct 505 TACAAATGCAAACCCACAATATGGAGACGTATCAGACGTCGACTTTACACAAATGCAAAA 564 Query 2459 TCAACTAGCAACTGCAAAAACATTGTTTGAAGAATTACCGGAACATGTAAAGGCTCACTT 2518 ||||||||| || |||||||| || |||||||| ||||||||||| || ||||| | || Sbjct 565 TCAACTAGCGACAGCAAAAACGTTATTTGAAGAGTTACCGGAACAAGTGAAGGCACGATT 624 Query 2519 CAACAATGAAATGCAT 2534 ||| || ||||||||| Sbjct 625 CAATAACGAAATGCAT 640 >seq207554 Length=4125 Score = 197 bits (218), Expect = 4e-47 Identities = 382/564 (68%), Gaps = 0/564 (0%) Strand=Plus/Minus Query 843 TGCAGATCTATCTGAAGCTACATCAGCAACTATTAATCAACTTCGATTAGCATTTGCAAC 902 ||||||| || | |||| || | || || || |||||| | || ||| ||| || Sbjct 2348 TGCAGATTTAACACAAGCAACCGCTGCGACAATAAATCAATTAAGAGAAGCTTTTCAAAT 2289 Query 903 ACAAAAATTTCTTGAAATACAAGCTCGAGGCGGTTCAAGATATATCGAAGTAATAAAAAA 962 |||| || ||||| | | || |||| || ||||||||| |||||||| ||| Sbjct 2288 ACAACGTCTTTATGAAAAAGACGCAAGAGGTGGAACAAGATATACAGAAGTAATTCAAAG 2229 Query 963 TCATTTTAACGTAACTAGCCCAGATGCTAGATTACAACGACCAGAATATCTTGGTGGCGG 1022 ||| ||| || || ||||| |||||||||||| ||||||||||||| || || || Sbjct 2228 TCACTTTGGAGTTACATCACCAGACGCTAGATTACAAAGACCAGAATATCTAGGCGGAGG 2169 Query 1023 AAGCTCACCGGTAAATATCAGTCCGGTCGCACAAACATCGTCAACTGATGCAACAACACC 1082 || | | ||| | | ||| | ||||||||| || || ||| |||||||||| Sbjct 2168 AAAAGATAGGATTAATGTAAATCCTATAGCACAAACAAGTTCCACAGATACAACAACACC 2109 Query 1083 GCAAGGTAACTTATCGGCCATAGGTACAACGGTACTTAGTGGCCACTCTTTTACAAAGAG 1142 ||||||||| |||| | | ||||| | | ||| || || || | || Sbjct 2108 ACAAGGTAACCTATCAGGTTACGCAACAACTGGATTTATGGGTCATAAATTCAGTAAATC 2049 Query 1143 TTTCACTGAACATACAATAGTAATAGGTATGGTATCTGTAAGAACAGATTTAACATACCA 1202 || ||||| ||| || || ||||||| | | |||| ||||| | |||||||| Sbjct 2048 ATTTACTGAGCATTCAGTAATAATAGGGCTAGCGAATGTATTCGCAGATCTTACATACCA 1989 Query 1203 ACAAGGACTGAACAGAATGTTTAGTAGAGAAACAATATACGATTACTACTGGCCAACCCT 1262 |||||| | ||| ||||||||| |||| | | |||| ||||||||| |||| Sbjct 1988 ACAAGGGTTACCAAGACACTTTAGTAGACAAACGAAGTTTGATTTCTACTGGCCTGCCCT 1929 Query 1263 TTCAACGATTGGCGAACAAGCAGTCAAAAACAAAGAAATATACGCACAAGGAAGTGCAGC 1322 | |||| ||||| || | || |||||||| ||||| ||||||| |||| Sbjct 1928 AGCCCACCTTGGAGAACAGTCAATTCTTAATAAAGAAATTTACGCCCAAGGAACAACAGC 1869 Query 1323 CGACGAAACTACGTTCGGCTATCAAGAGCGTTATGCGGAATATAGATACAAGCCAAGTTC 1382 |||||| | |||||||||||||| | || || || || | ||||| ||||| | Sbjct 1868 CGACGATTCAGTATTCGGCTATCAAGAAAGGTACGCTGAGTACCGCTACAAACCAAGCTT 1809 Query 1383 TGTAACTGGCAAATTCCGTTCAAA 1406 |||||| || || | || ||||| Sbjct 1808 TGTAACAGGACAAATGCGATCAAA 1785 Score = 84.2 bits (92), Expect = 6e-13 Identities = 136/192 (71%), Gaps = 13/192 (7%) Strand=Plus/Minus Query 526 AACGACTGGTTCCGAGATGAAAACCTCCAAG-CACCAAAAACAATTGATACAACAAGTGG 584 ||||||||||| |||||||||| |||||| || | || || | || | | | || Sbjct 2719 AACGACTGGTTTAGAGATGAAAATCTCCAAAACAGCGTAA-CAGTCGACAAAGGAGACGG 2661 Query 585 AAACGACACAACAACGTACGCATTAT-------TAAATAGAGGTAAAAAACACGATTATT 637 | || ||| ||| ||| ||||| | || |||||||||| ||||||||||| Sbjct 2660 ACCAGATACAGCAA-GTA---ATTATACCTTGCTGAAAAGAGGTAAAAGACACGATTATT 2605 Query 638 TTACATCAGCATTACCATGGCCTCAAAAAGGCGCAGACGTAACTATACCTTTAGGAACAT 697 | ||| || ||||| ||||| |||||||||| | ||||| |||| ||||| | Sbjct 2604 TCACAAGTGCTTTACCTTGGCCACAAAAAGGCGACGCAGTAACATTACCATTAGGCGGAA 2545 Query 698 CAGCACCAGTAA 709 | |||||||||| Sbjct 2544 CTGCACCAGTAA 2533 >seq61792 Length=4143 Score = 196 bits (216), Expect = 1e-46 Identities = 403/590 (68%), Gaps = 17/590 (3%) Strand=Plus/Plus Query 863 CATCAGCAACTATTAATCAACTTCGATTAGCATTTGCAACACAAAAATTTCTTGAAATAC 922 || ||||||| || |||||||| || ||| ||| | |||||| | || ||| Sbjct 2007 CAGCAGCAACAATCAATCAACTACGGCAAGCTTTTCAAGTACAAAAGCTACTAGAACGTG 2066 Query 923 AAGCTCGAGGCGGTTCAAGATATATCGAAGTAATAAAAAATCATTTTAACGTAACTAGCC 982 | || || ||||| || |||| | ||| |||||||| || || || || | | Sbjct 2067 ACGCCCGCGGCGGAACACGATACGTAGAAATAATAAAATCACACTTCGGTGTGACCACAC 2126 Query 983 CAGATGCTAGATTACAACGACCAGAATATCTTGGTGGCGGAAGCTCACCGGTAAATATCA 1042 | || ||| | || |||||||||| ||||| |||| | ||| ||||| Sbjct 2127 CTAGCGCCGGATGGC---GATCAGAATATCTAGGTGGTGGAACAAAAATGGTGAATATAT 2183 Query 1043 GTCCGGTCGCACAAACATCGTCAACTGATGCAACAACACCGCAAGGTAACTTATCGGCCA 1102 || | ||||||||||| ||||| ||| |||||| || ||||| || | || || | Sbjct 2184 CACCAATAGCACAAACATCATCAACCGATACAACAAGCCCACAAGGCAATCTCTCAGCAA 2243 Query 1103 TAGGTACAACGGTAC-TTAGTGGCCACTCT--TTTACAAAGAGTTTCACTGAACATACAA 1159 | || ||| | || |||| | | || |||||||| || ||||| |||||| ||| Sbjct 2244 TGGGAACA--GTAACATTAGAT-CAAATCGGATTTACAAAAAGCTTCACAGAACATTCAA 2300 Query 1160 TAGTAATAGGTATGGTATCTGTAAGAACAGATTTAACATACCAACAAGGACTGAACAGAA 1219 | || || | |||| ||| | | || |||||||||||||||| ||||||||| Sbjct 2301 CAATATTATGCCTGGTCAACGTACGCGCTGACCTAACATACCAACAAGGCATGAACAGAA 2360 Query 1220 TGTTTAGTAGAGAAACAATATACGATTACTACTGGCCAACCCTTTCAACGATTGGCGAAC 1279 ||| || ||| ||||| ||||||| |||||||| | ||| | | || ||||||| Sbjct 2361 TGTGGAGCAGACAAACACGCTACGATTTTTACTGGCCCGCACTTGCCAATATCGGCGAAC 2420 Query 1280 AAGCAGTCAAAAACAAAGAAATATACGCACAAGGAAGTGCAGCCGACGAAACTACGTTCG 1339 || |||| ||||||||||||||| ||||| | ||| ||| || || |||| Sbjct 2421 AATCAGTACTCAACAAAGAAATATACTTTCAAGGTACGTCAGACGATGACGAAACATTCG 2480 Query 1340 GCTATCAAGAGCGTTATGCGGAATATAGATACAAGCCAAGTTC---TGTAACTGGCAAAT 1396 |||| ||||| || ||||| ||||| | ||||| || ||| ||||| || ||| Sbjct 2481 GCTACCAAGAACGATATGCCGAATACCGCTACAAACC---TTCACTGGTAACAGGACAAT 2537 Query 1397 TCCGTTCAAACGCAACAGGAACATTAGAATCATGGCAT-TATGCACAGGA 1445 || | |||||| || |||| |||| |||||||| ||| |||| || Sbjct 2538 TCAGAAGCAACGCAGCAACAACACTAGATGCATGGCATCTAT-CACAAGA 2586 Score = 78.8 bits (86), Expect = 2e-11 Identities = 83/106 (78%), Gaps = 9/106 (8%) Strand=Plus/Plus Query 608 TATTAAATA---GAGGTAAAAAACACGATTATTTTACATCAGCATTACCATGGCCTCAAA 664 ||||| ||| |||||||| ||||| || || |||||||||||||||||||| |||| Sbjct 1743 TATTACATAAACGAGGTAAACGTCACGACTACTTCACATCAGCATTACCATGGCCGCAAA 1802 Query 665 AAGGCG---CAGACGTAACTATACCTTTAGGAACATCAGCACCAGT 707 |||||| ||| || || |||| |||||||| ||||||| || Sbjct 1803 AAGGCGATTCAGTCG--AC-CTACCCCTAGGAACAACAGCACCCGT 1845 >seq61791 Length=4256 Score = 179 bits (198), Expect = 1e-41 Identities = 397/584 (68%), Gaps = 31/584 (5%) Strand=Plus/Minus Query 866 CAGCAACTATTAATCAACTTCGATTAGCATTTGCAACACAAAAATTTCTTGAAATACAAG 925 ||||||| ||||| ||||| || |||||| | ||||||||| | ||| | | Sbjct 2280 CAGCAACAATTAACCAACTACGCCAAGCATTCCAAGTACAAAAATTATTAGAACGTGACG 2221 Query 926 CTCGAGGCGGTTCAAGATATATCGAAGTAATAAAAAATCATTTTAACGTAACTAGCCCAG 985 | ||||||| || ||||| | ||| |||| ||| ||| ||| |||||| | ||| Sbjct 2220 CAAGAGGCGGCACACGATATGTAGAAATAATTAAAGCTCACTTTGGCGTAACCACCCCGA 2161 Query 986 ATGCTAGATTACAACGACCAGAATATCTTGGTGGCGGAAGCTCACCGGTAAA--TATCAG 1043 || ||| | || ||||||| || ||||| |||| | ||| || ||||| Sbjct 2160 GCGCCGGATGGC---GATCAGAATACCTAGGTGGTGGAACAAAAATGGTGAACATATCA- 2105 Query 1044 TCCGGTCGCACAAACATCGTCAACTGATGCAACAACACCGCAAGGTAACTTATCGGCCAT 1103 || | ||||||||||| ||||| |||||||||| || ||||| ||| | || || || Sbjct 2104 -CCAATAGCACAAACATCATCAACAGATGCAACAAGCCCTCAAGGCAACCTCTCAGCAAT 2046 Query 1104 AGGTACA---ACGGTA--CTTAGTGGCCACTCTTTTACAAAGAGTTTCACTGAACATACA 1158 || ||| ||| || | | | | ||||| || || || ||||| || Sbjct 2045 GGGAACAGCAACGCTAGACCAAATAGGA-----TTTACCAAATCCTTTACAGAACACTCA 1991 Query 1159 ATAGTAATAGGTATGGTATCTGTAAGAACAGATTTAACATACCAACAAGGACTGAACAGA 1218 | | || | || | || || || | ||||||||||| || ||||| | ||| || Sbjct 1990 ACAATACTCTGTCTAATAAACGTCCGAGCTGATTTAACATATCAGCAAGGCATAAACCGA 1931 Query 1219 ATGTTTAGTAGAGAAACAATATACGATTACTACTGGCCAACCCTTT---CAACGATTGGC 1275 |||| || ||| |||| |||||| || |||||||| | | || |||| || ||| Sbjct 1930 ATGTGGAGCAGACAAACTCGATACGACTATTACTGGCC--CGCATTAGCCAAC-ATCGGC 1874 Query 1276 GAACAAGCAGTCAAAAACAAAGAAATATACG-CACAAGGAAGTGCAGCCGACGAAACTAC 1334 || ||| |||| || |||||||||||| |||| | | | || | ||||||| ||| Sbjct 1873 GAGCAATCAGTACTTAATAAAGAAATATACTTCACAGGCACAT-CAACAGACGAAAATAC 1815 Query 1335 GTTCGGCTATCAAGAGCGTTATGCGGAATATAGATACAAGCCAAGTTC---TGTAACTGG 1391 ||||||||||||||| | ||||| |||||| | ||||| || ||| ||||| || Sbjct 1814 GTTCGGCTATCAAGAAAGATATGCCGAATATCGGTACAAACC---TTCCCTGGTAACAGG 1758 Query 1392 CAAATTCCGTTCAAACGCAACAGGAACATTAGAATCATGGCATT 1435 |||| | |||||| || ||||||||| | ||||||| Sbjct 1757 ACAATTTAGAAGCAACGCAGCAACAACATTAGATGCCTGGCATT 1714 >seq87144 Length=4065 Score = 123 bits (136), Expect = 7e-25 Identities = 353/540 (65%), Gaps = 12/540 (2%) Strand=Plus/Plus Query 843 TGCAGATCTATCTGAAGCTACATCAGCAACTATTAATCAACTTCGATTAGCATTTGCAAC 902 ||| ||| | || || ||||| | || |||||||| |||||||| ||| || | Sbjct 2033 TGCTGATTTGTCAGACGCTACTGCGGCTACTATTAACGAACTTCGACAAGCGTTCCAAGT 2092 Query 903 ACAAAAATTTCTTGAAATACAAGCTCGAGGCGGTTCAAGATATATCGAAGTAATAAAAAA 962 |||| | | ||| | || || ||||| | |||||||||| | || ||| Sbjct 2093 ACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGATATATCGAGCTTATTAAATC 2152 Query 963 TCATTTTAACGTAACTAGCCCAGATGCTAGATTACAACGACCAGAATATCTTGGTGGCGG 1022 |||||| || || || || || |||||||||| |||||||| ||||| || || Sbjct 2153 TCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGCCCAGAATACCTTGGCGGTGG 2212 Query 1023 AAGCTCA---CCGGTAAATATCAGTCCGGTCGCACAAACATCGTCAACTGATGCAACAAC 1079 |||| ||||| || || | ||||| ||||| ||| | ||||||||||| || Sbjct 2213 ---CTCAACTCCGGTGAACATTACACCGGTAACACAACAATCTGCTACTGATGCAACCAC 2269 Query 1080 ACCGCAAGGTAACTTATCGGCCATAGGTACAACGGTACTTAGTGGCCACTCTTTTACAAA 1139 || || ||||| | | || | |||||| | ||| | || |||||||| Sbjct 2270 CCCACAGGGTAATCTTGCAGCTTTCGGTACAGCCAATCTTCATAATCATGGCTTTACAAA 2329 Query 1140 GAGTTTCACTGAACATACAATAGTAATAGGTATGGTATCTGTAAGAACAGATTTAACATA 1199 ||||| ||||| || |||| ||| |||| || || | |||| |||| || Sbjct 2330 ATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTTCGTGCAGACCTAACTTA 2389 Query 1200 CCAACAAGGACTGAACAGAATGTT---TAGTAGAGAAACAATATACGATTACTACTGGCC 1256 |||||||| || ||| | ||||| | |||| || ||||| | ||| ||||| Sbjct 2390 TCAACAAGGCCTTAACCGTATGTTCTCTCGTAG---CACTCGCTACGACTTCTATTGGCC 2446 Query 1257 AACCCTTTCAACGATTGGCGAACAAGCAGTCAAAAACAAAGAAATATACGCACAAGGAAG 1316 | || || ||||||||||| | | ||||||||||| | || | || | Sbjct 2447 TGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATCTTTGCCGATGGTAC 2506 Query 1317 TGCAGCCGACGAAACTACGTTCGGCTATCAAGAGCGTTATGCGGAATATAGATACAAGCC 1376 | | || || || | |||||||||||||| || ||||| |||||| | || || || Sbjct 2507 TTCTGCTGATGACGATGTTTTCGGCTATCAAGAACGATATGCAGAATATCGTTATAAACC 2566 Score = 111 bits (122), Expect = 4e-21 Identities = 415/650 (64%), Gaps = 47/650 (7%) Strand=Plus/Plus Query 53 AACATCAGTTTAGCGAAGTACCACATGCCGATATACAACGTTCAACATTTGATAGGAGTC 112 ||||| | || ||| || | || | || || || ||||| || | || ||| | || Sbjct 1261 AACATAACTTCAGCCAAATTCCTAAGGCTGAAATTCAACGGTCGTCTTTCGATCGCTCTC 1320 Query 113 ATGGGCTAAAAACCACATTTAATGCCGGTCAATTAGTACCAATATATGTAGACGAAGCAT 172 |||| | ||||| || ||| | |||| ||||| | |||||| | ||||| |||| Sbjct 1321 ATGGAGTGAAAACTACTTTTGACTCCGGAAAATTAATTCCAATACTACTCGACGAGGCAT 1380 Query 173 TGCCCGGAGATACATTTTCATGTAATCTCACTGCATTTAGCAGATTAGCAACACCAATTC 232 ||||||||||||| ||| | |||| | || ||||| | | | || ||||| ||| Sbjct 1381 TGCCCGGAGATACCTTTAAACTTAATATGACGGCATTCGCCCGTCTTGCCACACCCATTA 1440 Query 233 ATCCAACCATGGATAACGCATTCATGGATACCCATTTCTTCGCAGTACCAGTACGACTCG 292 |||| | |||||||| | |||||| || ||||||||| | |||||| | || | Sbjct 1441 ATCCCATAATGGATAATATGTACATGGACACGCATTTCTTCTCTGTACCAATGCGTTTAT 1500 Query 293 TCTGGGACGATTTCGAAGAATTTATGGGAGAAACAAAAACATATAAGGCAGCTGGTTCCG 352 | ||||| ||| || |||| | |||| |||||| | ||| | |||| Sbjct 1501 TATGGGATAATTGGCAAAAATTCAATGGAG-AACAAA-----TCGACCCAGGAGATTCC- 1553 Query 353 ATAGATTAGACGGAACACCCGACTTTTCAGTCGCAGCGCCAGTACCACCAACAATTACCG 412 || ||||| ||| | || | | || ||| || Sbjct 1554 ATTGATTA----------------TTTAATTC------CTACTATCAC-------TAGTC 1584 Query 413 CTTCTGGAAGCGGAGAAGCAGAAGCATCCCTTTCCGATTATTTCGGAATACCAACAAAAG 472 || || | || | || |||| || | | ||||| |||||||| ||||| || | Sbjct 1585 CTCCTATTATTGGCTATGCCGAAGGCTCTATGTATGATTACTTCGGAATCCCAACCAAGG 1644 Query 473 TAGGAGGATTAGAATTCAGTGCTCTATGGCACCGAGCATATACGCTCGTTTGGAACGACT 532 | | ||| | |||||| | |||| ||||||| ||||| |||||||| | Sbjct 1645 TTCCTAACCTTGAACACTCTGCTCTTTATAACCGCGCATATAATCTCGTCTGGAACGAAT 1704 Query 533 GGTTCCGAGATGAAAACCTCCAAGCACCAAAAACAATTGATACAACAAG----TGGAAAC 588 ||||||| || |||||| | |||| | | || || | || | ||| Sbjct 1705 GGTTCCGTGACGAAAACTTACAAGACTCTCTACCAGTT----CCACGCGGTGATGGTCCT 1760 Query 589 GACACAACAACGTAC-GCATTATTAAA--TAGAGGTAAAAAACACGATTATTTTACATCA 645 || ||| |||| || || | || || | |||| ||| ||||||||||| ||||| Sbjct 1761 GATACATCAACCGACTACACTCTTCAACGTCGAGGCAAACGCCACGATTATTTCACATCT 1820 Query 646 GCATTACCATGGCCTCAAAAAGGCGCAGACGTAACTATACCTTTAGGAAC 695 ||| | ||||||||||||||||||| | ||||| |||||||||| || Sbjct 1821 GCACTTCCATGGCCTCAAAAAGGCGACGCAGTAACATTACCTTTAGGTAC 1870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13059444213360