Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_026635.1 Length=1806 Score E Sequences producing significant alignments: (Bits) Value seq143869 219 5e-54 seq26967 217 2e-53 >seq143869 Length=1630 Score = 219 bits (242), Expect = 5e-54 Identities = 517/766 (67%), Gaps = 30/766 (4%) Strand=Plus/Plus Query 935 CACCTATACATAAATGCCTTATGTTAGGAAACCCCGTTCGACTATGCGCC-GACCTTATA 993 ||| || | | | ||||| |||||| ||| | || |||||||| || || ||| Sbjct 309 CACTTAAAGAAACATGCCGTATGTTGCTCGACCGAGCACGGCTATGCGCAAGAACT-ATA 367 Query 994 AGAAGCGCACTATGCGC-CGTAAGCCAACTGCTAGTAGCATGTATAACATCGC---ACGC 1049 ||||||| || | ||| |||||| | | | || | |||||||||| || || ||| Sbjct 368 AGAAGCGTCCT-TACGCACGTAAGACGAGTACTCGCAGCATGTATACAATTGCTAAACG- 425 Query 1050 AAAGTCCTCCGCAGT--AATGTCGAAACGAAATCCCGAATCACCTCATACTCCACCTCTG 1107 ||||||| ||| || || || || || ||||||||||||||| ||| | | Sbjct 426 --AGTCCTCA--AGTCCAACACAGAGACCAAGTCTCGAATCACCTCATACAGTACCGCAG 481 Query 1108 GTATGATATTGTCACACAATGTTCCACGACTAGTAGCTAGCCAATTGCTACAGACATCTC 1167 | ||| | | |||||||| || ||| | |||||||||||||| | ||| || || | Sbjct 482 GAATGGTCCTATCACACAACGTCCCAAGGCTAGTAGCTAGCCAGTGTCTAGTCACCTCAC 541 Query 1168 AAGGAACTGACTCCGGAGCAACCTCTGGAAATCGTGTAGGGATTAGTGTCCAACCTGTAG 1227 |||| || ||| | | |||||| ||||| ||| ||||||| ||| | || || | Sbjct 542 AAGGCACCGACGGTGACGGAACCTCCGGAAACCGTATAGGGATCGCCGTCGAGCCCGTCG 601 Query 1228 GGATTAAACTTTATATTGAAATCAACCAAGAGCAACCTGCCGCAGCAACCGGTCTCCTCA 1287 | |||| || || || ||| | ||| ||||| ||| ||| ||| | | ||| Sbjct 602 GCCTTAAGCTCTACATGGAATTAGCCCAGGAGCAGCCTCTATCAGGCACCAATATGGTCA 661 Query 1288 ATGGTGACATTTGGGTTAAATTCTGGGTATGCTCCA--CGCATCATAGCAATGTGAATAC 1345 ||||| |||| | || ||| | ||| || ||| | | |||||| | | | ||||| Sbjct 662 ATGGTAACATCTTTGTAAAAGTGTGG--ATTCTCAAAGCCCATCATTCTAGTATCAATAC 719 Query 1346 ATCTAATGATTTCCTCCGATTGAT---TAGCTCTAACACCATGTTAGCACCAGTCCAGAG 1402 || || ||||| ||||| || |||| || || ||| ||||||| || ||| | Sbjct 720 TAGCAACGACTTCCTACGATTAATCTCTAGC---AATACTATGCTAGCACCCGTACAGCG 776 Query 1403 ACGCACACATAATGTGATTAGGTCATTCAAACTCAATTTGAGAAACTACTTTACACAC-- 1460 || || || |||| | | |||||||| | |||| | | ||| | |||| || Sbjct 777 TCGTACCCACGATGTAGTCAAGTCATTCACAGTCAACCTTAAGAACGA--ATACA-ACTG 833 Query 1461 -TGGAATGCCGGGTCAGCTATTGACGCCACACCTGCTTTCAAGACCAGAACTATCTGGAT 1519 ||||| |||| || || | || | | | ||||||| ||||||||| || |||| || Sbjct 834 GTGGAACTCCGGTTCCGCCCTCGATGTCGCCCCTGCTTACAAGACCAGGACAATCTATAT 893 Query 1520 ACCTATGAACAAGATTAAACAGTATCTCTACGAGAATGATGTAACCGATAACGGTAAATA 1579 || ||||| || ||||| |||| |||||||| || || || || || ||| || | Sbjct 894 TCCGATGAATAACATTAAGAAGTACCTCTACGAAAACGACGTTACTGACGTCGGCAAGTC 953 Query 1580 TTTTGACTACTGTTGTCACGCTGTAGCCTTCAGCGCACACCCTTCAGTGAATACTTCCAC 1639 || || |||||| ||||| || ||||| ||||| ||||| ||| |||| || | Sbjct 954 CTTCGATTACTGTGTCCACGCAGTCGCCTTTAGCGCTCACCCAGCAGCAGATACCTCTAG 1013 Query 1640 TGCACTTGCTGCAGTTAAGCTTAACACAGAGTTCTTTTTCAAGGAC 1685 | | ||| | | || || ||||| ||||| || || || ||| Sbjct 1014 CCAAATCGCTACTATCAAACTCAACACTGAGTTTTTCTTTAAAGAC 1059 >seq26967 Length=1735 Score = 217 bits (240), Expect = 2e-53 Identities = 481/708 (68%), Gaps = 15/708 (2%) Strand=Plus/Minus Query 933 CTCACCTATACATAAA-TGCCTTATGTTAGGAAACCCCGTTCGACTATGCGCCGACCTTA 991 ||||| |||| ||||| ||||||||||||| || || ||| ||||| ||| || Sbjct 1735 CTCAC-TATATATAAAATGCCTTATGTTAGAAAGAATCGCACGA---TGCGCAAACCGTA 1680 Query 992 TAAGAAGCGCACTATGCGCCG-TAAGCCAACTGCTAGTAGCATGTATAACATCGCACGCA 1050 ||||||||||||| | | | | |||| ||| ||| |||||||||||||| || | Sbjct 1679 TAAGAAGCGCACT-TACTCTGGTAAGTCAAGCACTAAAAGCATGTATAACATTGCTAAAA 1621 Query 1051 AAGTCCTCCGCAGTAATGTCGAAACGAAATCCCGAATCACCTCAT--ACTCCACCTCTGG 1108 ||||||| || ||| || || || | ||||||||| | ||| | |||| Sbjct 1620 GAGTCCTCAAATCGAACACCGAGACTAAGTCGAGGGTCACCTCATGGAGTCC--CGCTGG 1563 Query 1109 TATGATATTGTCACACAATGTTCCACGACTAGTAGCTAGCCAATTGCTACAGACATCTCA 1168 || | ||||| |||||||| ||| ||||| | |||| |||||| | ||| |||| Sbjct 1562 AATCCTCTTGTCCCACAATGTCCCAAGACTAATCTCTAGTCAATTGATTGGAACAACTCA 1503 Query 1169 AGGAACTGACTCCGGAGCA-ACCTCTGGAAATCGTGTAGGGATTAGTGTCCAACCTGTAG 1227 ||||||||| | | | | | | | || |||| |||| | | |||||||||||| Sbjct 1502 AGGAACTGATGGTGATGGATATCACAGCAA-TCGTATAGGAACATCTATCCAACCTGTAG 1444 Query 1228 GGATTAAACTTTATATTGAAATCAACCAAGAGCAACCTGCCGCAGCAACCGGTCTCCTCA 1287 | | ||| | ||||| ||||| ||||| |||||| || | || | | | Sbjct 1443 GTCTAAAATTGTATATAGAAATGGCTCAAGAACAACCTCTTGCCGATACAATGATGATTA 1384 Query 1288 ATGGTGACATTTGGGTTAAATTCTGGGTATGCTCCACGCATCATAGCAATGTGAATACAT 1347 |||| | || ||| ||||| | ||||| | || ||||| ||| | ||| ||| Sbjct 1383 ATGGAAATATATGGATTAAAGTATGGGTCTTAAGGACACATCACTCAAATATTAATTCAT 1324 Query 1348 CTAATGATTTCCTCCGATTGATTAGCTCTAACACCATGTTAGCACCAGTCCAGAGACGCA 1407 | ||||||||||| || ||||| || ||||| | ||||||| || || ||||| | Sbjct 1323 CGAATGATTTCCTTCGTTTGATATCTTCAAACACTACTCTAGCACCCGTTCAAAGACGAA 1264 Query 1408 CACATAATGTGATTAGGTCA-TTCAAACTCAATTTGAGAAACTACTTTACACACTGGAAT 1466 | || ||||| || |||| || | ||||| | | ||| || ||| | ||||| Sbjct 1263 CTCACAATGTTGTT-CGTCAGTTTAGCATCAATCTAAAAAATTATTTTGAATGGTGGAAC 1205 Query 1467 GCCGGGTCAGCTATTGACGCCACACCTGCTTTCAAGACCAGAACTATCTGGATACCTATG 1526 || || || |||||||| || ||||| | || || || || | | || |||||| Sbjct 1204 GCTGGTTCTGCTATTGATGCAACACCAGAATTTAAAACAAGGGTGTTATATATCCCTATG 1145 Query 1527 AACAAGATTAAACAGTATCTCTACGAGAATGATGTAACCGATAACGGTAAATATTTTGAC 1586 || |||||| |||| || || || |||||| ||| ||| |||| || |||||| || Sbjct 1144 GGTAATATTAAAAAGTACCTTTATGAAAATGATACAACTGATGACGGAAAGTATTTTAAC 1085 Query 1587 TACTGTTGTCACGCTGTAGCCTTCAGCGCACACCCTTCAGTGAATACT 1634 || || ||| || ||||| |||| ||| || || ||| ||||| Sbjct 1084 TATTGCATTCATGCAGTAGCATTCACCGCTCATCCAGCAGCAGATACT 1037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5653011463232