Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_026654.1 Length=2142 Score E Sequences producing significant alignments: (Bits) Value seq21561 77.0 4e-11 >seq21561 Length=2206 Score = 77.0 bits (84), Expect = 4e-11 Identities = 111/155 (72%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 1167 GTTTGCGGTGAAGATCTTCTGGATTCCTGCGGGGATGTCTGCAGTCCCATAACGGACATG 1226 |||||| || || || || || || || || ||||| ||| || || ||||| ||||| Sbjct 1951 GTTTGCTGTAAAAATTTTTTGAATACCGGCTGGGATACATGCGGTTCCGTAACGTACATG 1892 Query 1227 TACTTGTCTTGGCTGAAATCTGTCGACCAGATGT--ATTTGAGCTTCTCTTGGAATGTGG 1284 | ||||| | | |||| ||| | ||| || ||| ||||||||| |||| Sbjct 1891 GATTTGTCGGTCATCATATCTATCG--CTGATTGCGATCTGATGCTCTCTTGGAGTGTGT 1834 Query 1285 GTGAAGGACATGTCGTCGAAGATGATTGACTTGTG 1319 ||||||||||||||| |||||||| ||||||| Sbjct 1833 AAGAAGGACATGTCGTCAAAGATGATGCACTTGTG 1799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6724914314048