Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027633.1 Length=4609 Score E Sequences producing significant alignments: (Bits) Value seq87144 105 2e-19 >seq87144 Length=4065 Score = 105 bits (116), Expect = 2e-19 Identities = 358/561 (64%), Gaps = 24/561 (4%) Strand=Plus/Plus Query 981 TGCTGATTTATCTTTGGCTACTGCTGCGACTATTAATTCGCTTCGTCAAGCTTTTCAGAT 1040 ||||||||| || |||||||| || |||||||| ||||| ||||| || || | Sbjct 2033 TGCTGATTTGTCAGACGCTACTGCGGCTACTATTAACGAACTTCGACAAGCGTTCCAAGT 2092 Query 1041 TCAGAAATTGTATGAGCGTGATGCTCGTGGAGGTACGCGTTATACTGAGGTACTTCGTGC 1100 || | | || ||||| || ||||| || || || |||| ||| | || | Sbjct 2093 ACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGATATATCGAGCTTATTAAATC 2152 Query 1101 TCATTTTGGTGTAGTTTCTCCTGATGCTCGTTTGCAGCGTCCTGAGTATTTAGGAGGTGG 1160 |||||| ||||| ||||||||| || || || || || || || || | || ||||| Sbjct 2153 TCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGCCCAGAATACCTTGGCGGTGG 2212 Query 1161 TTCTGTTCGTGTTATAATTAATCCTGTTGCTCAGACTTCTGCTACTAATGAAATTGGAGG 1220 || || || | |||| || || | || ||||||||| ||| || Sbjct 2213 CTCAACTCCGGTGAACATTACACCGGTAACACAACAATCTGCTACTGATGCAACC----- 2267 Query 1221 TGTTACTCCTCAAGGTAATCTTGCTGCTTATGGTATAGTTAGTTCTCATGGTCATGGTTT 1280 || || || ||||||||||| |||| |||| || | | |||| |||||| || Sbjct 2268 ----ACCCCACAGGGTAATCTTGCAGCTTTCGGTACAGCCAATCTTCATAATCATGGCTT 2323 Query 1281 TATTAGGTCTTTTGTTGAGCATTCGATTATTATTGGTCTTGTTAGTGTTCGTGCTGATTT 1340 || | || || || || | ||||| || ||||| || |||||||| || | Sbjct 2324 TACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTTCGTGCAGACCT 2383 Query 1341 GTCTTATCAGCAAAATATAAATAGGATGTGGTCTCGTCAGACTCGGTTTGATTTTTATTG 1400 ||||||| ||| | || | |||| |||||| ||||| | || || ||||| Sbjct 2384 AACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTACGACTTCTATTG 2443 Query 1401 GCCTGTTTTGTCGCATTTAGGTGAGGATGCTGTTTTAAATAAAGAGATTTATTTTGATAC 1460 ||||| | | || || | || || | | || | || ||||| || | | ||| Sbjct 2444 GCCTGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATCTTTGCCGATGG 2503 Query 1461 TACTGCTAATGTTGCTACTTGGAATAATGAAGAAGCTTTTGGTTATCAAGAGCGTTGGGC 1520 |||| | ||| | |||| || | ||| || |||||||| || | || Sbjct 2504 TACTTC------TGC---------TGATGACGATGTTTTCGGCTATCAAGAACGATATGC 2548 Query 1521 TGATTATCGTTATTATCCTTC 1541 || ||||||||| | ||||| Sbjct 2549 AGAATATCGTTATAAACCTTC 2569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14590595464560