Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027636.1 Length=4501 Score E Sequences producing significant alignments: (Bits) Value seq87144 78.8 3e-11 >seq87144 Length=4065 Score = 78.8 bits (86), Expect = 3e-11 Identities = 128/182 (70%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 837 TCTATGCTGATCTTTCCCAGGCTACCGCTGCAACAATTAATCAGCTCCGGCAGTCGTTTC 896 ||| ||||||| | || | ||||| || || || ||||| | || || || |||| | Sbjct 2029 TCTTTGCTGATTTGTCAGACGCTACTGCGGCTACTATTAACGAACTTCGACAAGCGTTCC 2088 Query 897 AGATACAGAAGCTTTTAGAAAGGGATGCTCGTGGTGGAACACGATATACAGAGATTGTGC 956 | |||| || |||||| | || || ||||| || || ||||||| ||| || | Sbjct 2089 AAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGATATATCGAGCTTATTA 2148 Query 957 GATCTCACTTCGGCGTTATCAGC-CCGGATGCTCGCTTGCAACGACCCGAGTACCTTGGC 1015 |||||| ||||| || || | || || || || || ||||| || || ||||||||| Sbjct 2149 AATCTCATTTCGGTGTC-TCTTCTCCTGACGCACGATTACAACGCCCAGAATACCTTGGC 2207 Query 1016 GG 1017 || Sbjct 2208 GG 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14246086433040