Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027637.1 Length=4656 Score E Sequences producing significant alignments: (Bits) Value seq87144 113 1e-21 seq129457 102 2e-18 >seq87144 Length=4065 Score = 113 bits (124), Expect = 1e-21 Identities = 299/454 (66%), Gaps = 6/454 (1%) Strand=Plus/Plus Query 1044 TGAGGAATCCTCGCCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTATGATCA 1103 ||| | | || | || || |||| |||| | || || | |||||| | | || |||| Sbjct 2258 TGATGCAACCACCCCACAGGGTAATCTTGCAGCTTTCGGTACAGCCAATCTTCATAATCA 2317 Query 1104 TGGTTTTACTAAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGTGC 1163 ||| ||||| || ||| | ||||| || |||| | ||||| | || ||||||| Sbjct 2318 TGGCTTTACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTTCGTGC 2377 Query 1164 TGATTATACATATCAGCAGGGTGCTGAAAGATTCTGGTTCCGCAAAGCTCGTTTCGATCT 1223 || || ||||| || || | | | | | | || | |||| | ||| | Sbjct 2378 AGACCTAACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTACGACTT 2437 Query 1224 TTATACTCCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTATGC 1283 ||| |||| | || | |||||||||||| || || | ||| |||| || | ||| Sbjct 2438 CTATTGGCCTGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATCTTTGC 2497 Query 1284 TCAAGGAACTTCTGCTGATCAAGAGCCTTTTGGTTACCAAGAAGCATGGGCTGAATTGCG 1343 | || |||||||||||| | || ||| || || |||||| || || |||| || Sbjct 2498 CGATGGTACTTCTGCTGATGACGATGTTTTCGGCTATCAAGAACGATATGCAGAATATCG 2557 Query 1344 TTATAAGCCTTCTCGTATTTCTGGTTATTTTCGAAGTAATGCCACTGGTACTTTAGATGC 1403 |||||| ||||| ||| || |||||| |||||| ||| | | | ||||| Sbjct 2558 TTATAAACCTTCCATCATTACTTCACTCTTTCGATCTAATGCTGCTGCTTCACTCGATGC 2617 Query 1404 TTGGCATTTATCCCAGGAATTTACATCCCCTCCAACTCTTTCACCTGCTTTTATTATTGA 1463 ||||||||||||||| || || | | | || ||| ||| ||||| ||||||| Sbjct 2618 TTGGCATTTATCCCAAGACTTCGCGGCTCTCCCTGCTC--TCA-ATGCTTCATTTATTGA 2674 Query 1464 A---AATCCACCTATGGCTCGTGTTGAGGCTGTT 1494 | ||||||||| | | |||| ||| || ||| Sbjct 2675 AGATAATCCACCTGTCGATCGTATTGTCGCGGTT 2708 >seq129457 Length=619 Score = 102 bits (112), Expect = 2e-18 Identities = 304/467 (65%), Gaps = 14/467 (3%) Strand=Plus/Minus Query 182 TTGCTCGTATGTCTACTCCCATTTATCCGGTTATGGACAATTTATTCATCGATACCCAAT 241 |||| ||| | | || ||||| |||| | ||||| ||| ||| || ||||| || | Sbjct 596 TTGCACGTCTTGCCACACCCATAAATCCCATCATGGATAATCTATATATGGATACGCACT 537 Query 242 TTTTCTTTATACCCAATCGTTTACTTTGGACCCACTGGGAGCAGTTTATGGGTTACCAAG 301 |||||| | | || | ||| |||| ||| | | ||| | | || | ||| | ||| Sbjct 536 TTTTCTCTGTGCCGATCCGTCTACTATGGGACAATTGGCAAAAATTCAATGGTGAACAAA 477 Query 302 AAAACCCTGGCGATTCTATCGATTACACTTTGCCTACTATTACTAGTCCTACTGGTGGTT 361 | || |||||||| || || ||| | ||||| || || |||| |||| || | Sbjct 476 TCGATCCCGGCGATTCCATTGACTACTTAATACCTACAATCACAGCTCCTGCTGGCGGCT 417 Query 362 ATTTAGAGCAAACTATTTATGACTATCTTGGCCTCCCTACTAAGATTGCTGGTGTTACCC 421 | ||| |||| | ||| || ||||| | || ||||| | ||||| || Sbjct 416 ACGCAGAAGGCTCTATGTTTGATTACTTTGGCATACCGACTAAAGTCGCTGG------CC 363 Query 422 ATCAAGCACTT---CCTTTGC----GTGCTTACAACAAGGTTTATAATGATTGGTATCGC 474 | || |||| |||||| | || ||||| || | || || |||| || Sbjct 362 TTGAA-CACTCTGCCCTTTGGAACAGAGCCTACAATCTTGTCTGGAACGAATGGTTCCGT 304 Query 475 GATCAGAATTTACAAGATTCTGTTGTTTTGCCTAATGGTGATGGTCCTGATGCTCCTACT 534 || | || ||||||| ||| || | | || ||||||||||||||| | || Sbjct 303 GACGAAAACCTACAAGACTCTCTTACTGTCTCTCGTGGTGATGGTCCTGACCCAGACACC 244 Query 535 GATTATGTTTTGTTGCCTCGTGGTAAACGCCACGATTATTTTACCTCTGCACTTCCTACA 594 || || | | | ||| || ||||||||||| |||||||||||||||||||| Sbjct 243 GACTACACTCTACAACGTCGCGGCAAACGCCACGACTATTTTACCTCTGCACTTCCATGG 184 Query 595 CCTCAGAAGGGTGCTGCTGTTCAGCTTCCACTTGGTACTACCGCACC 641 || || || || || ||||| || ||||| || ||| | || || || Sbjct 183 CCACAAAAAGGGGCCGCTGTCCAACTTCCCCTAGGTGCAACTGCTCC 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14740520691240