Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027642.1 Length=4624 Score E Sequences producing significant alignments: (Bits) Value seq87144 141 3e-30 >seq87144 Length=4065 Score = 141 bits (156), Expect = 3e-30 Identities = 523/801 (65%), Gaps = 29/801 (4%) Strand=Plus/Plus Query 793 ATTTTTGCGAATTTGGC-GACTGCTACTGCGGCTACTATTAACCAGCTTCGTCAGGCTTT 851 || ||||| ||||| | ||| ||||||||||||||||||||| | ||||| || || || Sbjct 2028 ATCTTTGCTGATTTGTCAGAC-GCTACTGCGGCTACTATTAACGAACTTCGACAAGCGTT 2086 Query 852 TCAGATACAGAAGATTTATGAGAGGGATGCCCGTGGAGGTACGCGTTATACGGAGCTTAT 911 || |||| | | || | || |||||||| || || || |||| |||||||| Sbjct 2087 CCAAGTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGATATATCGAGCTTAT 2146 Query 912 TCAGGCTCACTTTGGCGTCACTTCTCCTGACGCTCGTTTGCAGCGTGCTGAGTATCTCGG 971 | | |||| || || ||| ||||||||||||| || || || || | || || || || Sbjct 2147 TAAATCTCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGCCCAGAATACCTTGG 2206 Query 972 TGGTGGTTCTACTCCCATTAATGTTAATCCTATTGCGCAGACGCAAGGTACTGGGGCGTC 1031 ||||| || ||||| | || ||| || | | || ||| | || | Sbjct 2207 CGGTGGCTCAACTCCGGTGAACATTACACCGGTAACACA---ACAATCT------GCTAC 2257 Query 1032 TGGCACGACTACACCGCAGGGTAATCTGGCCGCTATTGGTACTATGTCA--CAT-AGAGG 1088 || | || || || ||||||||||| || ||| | ||||| | || | | | | Sbjct 2258 TGATGCAACCACCCCACAGGGTAATCTTGCAGCTTTCGGTAC--AGCCAATCTTCATAAT 2315 Query 1089 CGTCGGTTTTACTAAGTCGTTTACCGAGCATTGTCTGCTAATTGGTTTGTTGGAGGTTAC 1148 | | || ||||| || || || ||||| || ||| | |||| ||| || | ||| Sbjct 2316 CAT-GGCTTTACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTTCG 2374 Query 1149 TGCTGATTTGTCTTATCAGCAGGGTCTTGAACGTATGTGGTCTCGTCAAACGCGGTTTGA 1208 ||| || | ||||||| || || ||| | ||||||| |||||| || || | || Sbjct 2375 TGCAGACCTAACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTACGA 2434 Query 1209 TTTTTTCTGGCCCGCGTTGGCGCAGATTGGTGAGCAGGCGGTGCTCAATCAAGAGATTTG 1268 || | ||||| || | | || |||| || || | | || || |||| || | Sbjct 2435 CTTCTATTGGCCTGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATCTT 2494 Query 1269 TATGGTTGGCGGTGCTACGGATACCCAGATTTGGGGGTATCAGGAGCGTTATGCTGAGTA 1328 | | ||| | || | ||| | | ||| || ||||| || || ||||| || || Sbjct 2495 TGCCGATGGTACTTCTGCTGATGACGATGTTTTCGGCTATCAAGAACGATATGCAGAATA 2554 Query 1329 TCGGTATAAGCCGTCTCGTATTTGCGGTCAGT-TTCGGAGTTCGTATACGGC-GC--CGT 1384 ||| ||||| || || | | || | ||| | || || || || | || || | Sbjct 2555 TCGTTATAAACCTTC-CATCATTAC-TTCACTCTTTCGA--TCTAATGCTGCTGCTTCAC 2610 Query 1385 TGGATAGTTGGCATTTGTCGCAATACTTTACGACTCTTCCGGCGCTTAATTCGACTTTTA 1444 | ||| ||||||||| || ||| |||| || |||| || || || ||| | | |||| Sbjct 2611 TCGATGCTTGGCATTTATCCCAAGACTTCGCGGCTCTCCCTGCTCTCAATGCTTCATTTA 2670 Query 1445 TTCAGGATGCTCCGCCTATTTCGCGGATTGTTGCGGTGCCTTCGCAACCGCAGTTTTTGT 1504 || | ||| ||| ||| | || ||||| ||||| || | |||| || ||| | | Sbjct 2671 TTGAAGATAATCCACCTGTCGATCGTATTGTCGCGGTTCCAACTGAACCCCAATTTATCT 2730 Query 1505 TGGATTGT--TATTTCAATTTGAAGTGCTCTCGGCCCATGCCGGTGTATGGTGTGCCTGG 1562 | |||| | || ||| | || ||| || || || ||||| ||||| || || || Sbjct 2731 TCGATTCTCACATGTCATTACGATGTG-TC-CGTCCAATGCCTGTGTACTCAGTACCCGG 2788 Query 1563 TAACATTGATCGTTTCTAAGG 1583 || |||| ||||||||| Sbjct 2789 CTTAATCGATCATTTCTAAGG 2809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14638443941160