Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027799.1 Length=1600 Score E Sequences producing significant alignments: (Bits) Value seq268156 86.0 6e-14 >seq268156 Length=1665 Score = 86.0 bits (94), Expect = 6e-14 Identities = 189/282 (67%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 1059 AATTATACCACAATAAAGTGCTTTATTTAGGAAAATGGCTTGCTTGCCAGCAAGGTACTG 1118 |||||| |||||||||||| |||||||| |||||||| | || | ||||| | Sbjct 932 AATTATTCCACAATAAAGTTGATTATTTAGATAAATGGCTAGAATGTAAACAAGGAGTAG 991 Query 1119 CAGATCCAAATGACGCTA-----GCTCTA-GATTGATGAGAGTCGGTGACGAACTCCTCC 1172 |||| ||| ||||| | | | | || || | ||| | || || ||| || || Sbjct 992 CAGACCCAGATGACACCACGAGTGGTGTAAGAAATGTCAGATTAGGAGATGAAATCTACC 1051 Query 1173 TTAGGAACATCAATGTGCGATTCTGGTTGTCTAATAAAAGTGACAGACCAAATGTAATGT 1232 | || |||||| | | || ||| | || || |||| ||||||||| ||| |||| Sbjct 1052 TCCACAATATCAATATAAGGTTTTGGCTCTCCAACAAAAATGACAGACCCAATTGTATGT 1111 Query 1233 ACAAAGCATACCTTTTTTGGTACGATACCGGAGCAACTCTATCGGATACCTTTAATTATT 1292 | ||| || ||| ||||||||||||| || | || || || || | | | Sbjct 1112 ATAAACTATTCCTATTTTGGTACGATAGTGGCACTACACTCAGTGACGCCGTATGCTTCT 1171 Query 1293 TTACAAATACTAATAAAATGATAGATAGAGTCAACAATGAGA 1334 ||||| | | || |||||| |||||||| ||||| |||| Sbjct 1172 TTACACAAAAGAACAAAATGCTAGATAGATACAACAGCGAGA 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4995832929696