Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028993.1 Length=4468 Score E Sequences producing significant alignments: (Bits) Value seq87144 205 3e-49 >seq87144 Length=4065 Score = 205 bits (226), Expect = 3e-49 Identities = 530/800 (66%), Gaps = 32/800 (4%) Strand=Plus/Plus Query 822 TGCAGATTTGAGTCAG--GCTACTGCTGCAACTATTAATCAGTTGCGTCAGTCATTTCAG 879 ||| |||||| |||| |||||||| || |||||||| | | || || | || || Sbjct 2033 TGCTGATTTG--TCAGACGCTACTGCGGCTACTATTAACGAACTTCGACAAGCGTTCCAA 2090 Query 880 ATTCAAAAACTTTTAGAGCGTGATGCTCGTGGTGGTACACGTTATACGGAGATTATTCGT 939 | ||| || ||||| ||||| || ||||| || || || |||| ||| ||||| Sbjct 2091 GTACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGATATATCGAGCTTATTAAA 2150 Query 940 GCTCATTTCGGTGTTATTTCTCCTGACGCTCGTTTACAGCGTCCTGAATATCTTGGTGGC 999 ||||||||||||| |||||||||||| || ||||| || || ||||| ||||| || Sbjct 2151 TCTCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGCCCAGAATACCTTGGCGGT 2210 Query 1000 GGCTCTACTCCAGTTATCATTAATCCTATTGCCCAAACATCGGGTACAGGTGTTACTGGC 1059 ||||| ||||| || | ||||| || | | ||| ||| || ||||| Sbjct 2211 GGCTCAACTCCGGTGAACATTACACCGGTAACACAACAATC---------TGCTACTGAT 2261 Query 1060 GGTAGTACTCCTCTCGCTAATCTTGCTGGTGTTGGTACTGTCCTCGCCTC-TGGTCATGG 1118 | | || || | | ||||||||| | | | ||||| | || | || | |||||| Sbjct 2262 GCAACCACCCCACAGGGTAATCTTGCAGCTTTCGGTACAG-CCAATCTTCATAATCATGG 2320 Query 1119 CTTTACTCAGTCGTTCACTGAACATGGCGTAATTATTGGTTTGGTTAGTATTCGTGCTGA 1178 |||||| | || ||||| ||||| | | || || ||| |||| ||||||| || Sbjct 2321 CTTTACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTTCGTGCAGA 2380 Query 1179 TTTGACTTATCAACAGGGTTTGCATCGTATGTGGTCTCGTTCCACACGTTATGATTTTTA 1238 | ||||||||||| || | | ||||||| |||||| ||| || || || || || Sbjct 2381 CCTAACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTACGACTTCTA 2440 Query 1239 TTTCCCTGCTTTTGCTATGTTGGGTGAACAGCCTGTTTATAATCGTGAGTTGTATATTGA 1298 || |||||| | || | || ||||| | || ||| || | | | || Sbjct 2441 TTGGCCTGCTCTATCTCACCTTGGCGAACAATCCATTCTTAACAAAGAAATCTTTGCCGA 2500 Query 1299 CGGTTCTGCTAACGATGGTAATGTTTTTGGTTATCAAGAGCGTTGGGCTGAATATCGTTA 1358 ||| || || |||| ||||||| || |||||||| || | || ||||||||||| Sbjct 2501 TGGTACTTCTGCTGATGACGATGTTTTCGGCTATCAAGAACGATATGCAGAATATCGTTA 2560 Query 1359 CAAGCCTTC--TCA-AATTTCAAGTTTGTTTAAGTCTACCAGCGCAGGCACTATTGATGC 1415 || ||||| ||| | |||| | ||| |||| || | | | ||||| Sbjct 2561 TAAACCTTCCATCATTACTTCA---CTCTTTCGATCTAATGCTGCTGCTTCACTCGATGC 2617 Query 1416 TTGGCACTTGGCTCAGAAGTTTACATCTTTGCCTACTTTGAATAGTACGTTTATTCAGGA 1475 |||||| || | || | || | || | ||| || | ||| | | |||||| | || Sbjct 2618 TTGGCATTTATCCCAAGACTTCGCGGCTCTCCCTGCTCTCAATGCTTCATTTATTGAAGA 2677 Query 1476 AAATCCTCCTGTTTCTCGTGTTGTTGCGGTTGGTGCTGCGGCTAATGGACAGCAGTTTAT 1535 ||||| ||||| |||| |||| |||||| | | || || || ||||| Sbjct 2678 TAATCCACCTGTCGATCGTATTGTCGCGGTT---------CCAACTGAACCCCAATTTAT 2728 Query 1536 TTTTGATTCTTTC-TTTCATAATGTTGTTGCTCGTCCTATGCCCTTGTATTCTGTTCCTG 1594 || |||||| | | |||| | | || || ||||| ||||| |||| || || || | Sbjct 2729 CTTCGATTCTCACATGTCATTACGATG-TGTCCGTCCAATGCCTGTGTACTCAGTACCCG 2787 Query 1595 GCATGATCGATCATTTCTAA 1614 || | ||||||||||||||| Sbjct 2788 GCTTAATCGATCATTTCTAA 2807 Score = 109 bits (120), Expect = 2e-20 Identities = 351/535 (66%), Gaps = 31/535 (6%) Strand=Plus/Plus Query 157 CCCGGTGATACATTTAATTTGAATATGACTGCTTTTGCTCGTCTGGCTACTCCTTTTT-T 215 ||||| ||||| ||||| | |||||||| || || || ||||| || || || || | Sbjct 1383 CCCGGAGATACCTTTAAACTTAATATGACGGCATTCGCCCGTCTTGCCACACCCATTAAT 1442 Query 216 CCTGTTATGGATAATATGGTTTTGGATAGTCtttttcttttttGTTCCTAACCGTTTGAT 275 || | |||||||||||| |||| | | ||| ||| | ||| || | ||||| | Sbjct 1443 CCCATAATGGATAATATGTACATGGACACGCATTT-CTTCTCTGTACCAATGCGTTTATT 1501 Query 276 TTGGGATAACTGGCAAAAGTTTA-TGGTGAGCAGCGTAACCCTGGTGATTCGACTTCT-A 333 |||||||| |||||||| || | ||| || || |||| || ||||| | | | | Sbjct 1502 ATGGGATAATTGGCAAAAATTCAATGGAGAACAAATCGACCCAGGAGATTCCATTGATTA 1561 Query 334 TGTTGTTCCT-CAACAAGT--TTCTCCCGCAGGTGGTTATGCTGTTGGTTCTTTGCAAGA 390 | | ||||| | | | | | |||| ||| ||||| | || ||| || | || Sbjct 1562 TTTAATTCCTACTATCACTAGTCCTCCTATTATTGGCTATGCCGAAGGCTCTATGTATGA 1621 Query 391 CTATATGGGTTTACCAACTGTTGGTCAGGTTGGTG--CTGGCAATACTATTTCCCATTGC 448 || | || | ||||| ||||| | || | || ||| | || Sbjct 1622 TTACTTCGGAATCCCAACCA------AGGTTCCTAACCTTG-AACACTCT--------GC 1666 Query 449 GCTTTTTTACTCGTGCCTATAATCTTATTTGGAATGAATGGTTTAGAGATCAGAATTTAC 508 |||| | || || || |||||||| | ||||| |||||||| | || | || |||| Sbjct 1667 TCTTTATAAC-CGCGCATATAATCTCGTCTGGAACGAATGGTTCCGTGACGAAAACTTAC 1725 Query 509 AAAATTCTGTAACCGTTGATACTGGTGACGGTCCTGATGCGTCGGCTTCAACTAATTACA 568 || | ||| || | ||| ||||| ||||||||| | || ||| | |||| Sbjct 1726 AAGACTCTCTACCAGTTCCACGCGGTGATGGTCCTGATACATC------AACCGACTACA 1779 Query 569 CGTTGTTGCGCCGTGGTAAGCGGCATGATTATTTTACTTCTGCACTTCCATGGCCTCAGA 628 | | || || || || || || |||||||| || |||||||||||||||||||| | Sbjct 1780 CTCTTCAACGTCGAGGCAAACGCCACGATTATTTCACATCTGCACTTCCATGGCCTCAAA 1839 Query 629 AGGGTTCTTCTGTAACTTTGCCATTAGGTACCAGTGCTCCTATTAAGTCAGATAC 683 | || | ||||| || || |||||||| | ||||| ||||| | ||||| Sbjct 1840 AAGGCGACGCAGTAACATTACCTTTAGGTACTACCGCTCCAATTAAATACGATAC 1894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14140819784520